Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1754 ATGTCTCAGACCAACTGGGAAGCTGATAAAATGTTAGATGTGTATATTCACGATTATTTGGTAAAAAGAGATTTGAAGGCTACTGCTCAGGCTTTTCAAGCAGAGGGAAAAGTGTCTTCAGATCCTGTGGCTATTGATGCGCCTGGAGGCTTTCTTTTTGAATGGTGGTCGGTATTCTGGGATATATTCATTGCTAGGACTAATGAGAAGCACTCTGATGTTGCTGCATCTTATATTGAGACACAATTAATAAAAGCAAGAGAGCAACAGCAACATCAGCAACATCAACAGCAGCAGCAGCAGCAAACACAGCCACAACAACAGCAACCACAACACATGCAGATGCTTCTAATGCAGAGACATGCCCAACAGCAGCAGCAGCAGCAGCAACAACAACAGCATCAACAGCAACAACAGCCACAGCAGCAGCAACAACAGACTCAGCAACAACAACAACAGCGAAGAGATGGAGCCCAACTCTTAAATGGAAATTCAAATGGTTTTGTTGGAAATGATCCTCTTATGCGTCAGAATCCCGGATCTGTAAATGCGTTGGCTACAAAAATGTACGAGGACAGATTAAAACTACCTCTTCAGAGGGATTCTCTAGATGATGCGGCTATGAAACAAAGGTATGGAGAAAACGTTGGGCAGCTGTTGGACCCAAATCATGCATCAATTCTGAAGTCAGCTGCAGCAACCAGCCAGTCCTCAGGGCAAGTGTTACATGGTGCAGCTGGGGGAATGTCTCCTCAAGTTCAATCTAGGAGCCAGCAATTGCCAGGTTCCACACCGGATATAAAGAGTGAGATCAACCCAGTTTTGAATCCTAGAGCTGCAGGTCCTGAGGGATCACTGATGGGCATTCCTGGATCAAATCATGGCGGCAATAATTTGACCTTAAAGGGATGGCCCCTCACCGGGCTAGAGCAACTGCGTTCTGGGATCCTTCAGCAACAAAAACCTTTCATACAGGCTTCTCAATCATTTCCTCAGCTTCATCAGATGTTGACACCACAACACCAACAACAACTTATGCTCGCACAACAGAATTTAACATCACCTTCTGTTACTGATGATGGTAGAAGATTGAGAATGCTTTTGAATAGTCGAATGGCAAAAGATGGACTTCCAAATTCTGTTGGTGATGTTGTTCCAAATGTTGGATCTCCTCTCCAAGCTGGCAGTCCTCTCTTGCCTCGTGGAGATAGCACAGAAATGATCATTAAGATAAAAATGGCTCAAATGCATCAACAGCAGCAGCAACAGAATAGTAGCCAGCAACAGCAGCAGCATGCTCTTTCTAATCAACAGTCGCAAAGCTCAAACCACAATATGCCTCAGCAAGAAAAAATTGGGGGTGCTGGCAGTGTCACCATGGATGGTAGCATGTCAAACTCTTTTCGTGGAAATGATCAGGTTTCAAAAAATCAGGCTGGGAGAAAGAGGAAGCAGCCAGTGTCATCTTCAGGTCCAGCAAATAGCTCAGGAACAGCAAATACAGCAGGCCCATCCCCAAGTTCTGCTCCTTCAACTCCCTCAACCCATACACCTGGAGATGCAATCTCAATGCCTGCTTTGCCTCACAGTGGTAGTTCATCTAAACCTTTGATGATGTTCAGCAGTGATGGCACTGGAACTTTTACATCCCCCTCAAATCAGTTGGCTGATATGGATCGCTTTGTTGAGGATGGGTCTCTTGATGACAACGTTGAGTCTTTTTTATCCCATGATGATACGGACCCTAGAGATCCTGTAGGGCGCTGCATGGATGGCAGCAAAGGATTCACATTTACGGAGGTGAATTCTGTTAGAGCAAGCTCAAGCAAAGTTTTCTCTTGCCACTTTTCATCTGATGGAAAACTGCTTGCTAGTGGTGGCCAGGATAAGAAGGCTGTATTATGGTACACAGAAAATTTAAAGCCGAAAACTTCACTTGAAGAACATACTTCCATGATCACTGATGTTCGTTTTAGTCCTAGCATGCCCCGGCTTGCAACTTCATCATTCGATCGAACAGTCAGAGTTTGGGATGCTGACAATCATTGTTATTCTCTACGTACTTTTACGGGACATTCTGCTTCTGTTACGTCTTTGGACTTCCATCCGAAGAAGGACGACTTTATTTGCTCTTGTGATAGTGATGGTGAGATTCGATACTGGAATATCACTAATGGCAGCTGTGCAGCAGTATTCAAGGGTGGTATGGGCCAGATGAGATTTCAACCTCGTCTTGGGAGATACTTTGCTGCTTCTGTAGATAATATCGTATCCATTTTTGATGTTGAGACACAAGCACGTCTGCATTCATTACAGGGACACACCCAAAAGGTTCAGTCACTTTGTTGGGATCCTTCTGGAGAGTTCCTGGCATCTGTTAGCGAGGATTCTGTTCGAGTGTGGACGCTTGCTTCGGGGAATGAGGGCGAATCCATTCACGAGTTGAGCTGTAACGGCAATAAATTCCACTCTTGTGTTTTCCATCCCACCTATTCTACTTTGCTGGTCATTGGATGCTACCAGTCATTAGAGCTTTGGAACACGACTGAGAACAAGACGATGACTCTATCAGCTCATGAAGCTTTAATATCTTCCTTAGCAGTGTCCACGGCATCAGGTCTAGTTGCTTCGGCCAGCCACGACAAGCGGCTTCGACCTTTGCCATTCGATCAGTTTCGCCGGTGCTCGGAAATCCGTGATTTCTTCATTAGAGAGAGTTCGTATTTTCCTTGTTCCAGTTGTTTGCTATCCGCATCAGTGGTCCGTGTAATGTCTGAGGCAAGCAAGAGTCAGGGTACTTGCACCGAGCGCTTGATTGAGGAAACCAAATGTTTACAACCCCTTCAGGTGGATCCCGACAATGGAGTTTCCATGGATATACTAAAGGAGGACATGGATGAACTGAACCAGAGGAAAGTTACAATGGTGAAGGATTTGCAACTTTTACGTGATAGAGTCAATAAGGCGGGTGCTAATGTGGTGCAAAATCTGATGTCATGCTTAAAGACTTTGGAGGATCTCGGAAAGCAGGAATCTGAATTCCTATCTACTTGTAATTCAAAGCGTAGTAAATTGCAAGATGAGATTATCGAGCTGGAGGGAAGATTAACCAGTGACGGTGAATGCTCAAATTTCTTGGATAGCTTAGATGATTTGATTAGTGAATCTGAGGAGGAATTGAATTCAGTAAAGAAGGCACTCAGATCGAGCTTGAGGGAAACACTAGCATTAAAGAGGCTTCTTGATGATGTGCCAACCCAAACTGAACTCATCCAGTACGAGCGCCGATTTTCGGAGCTATACATTAACATCCAGGACAAACTTAGGCAAACACGCAGATACTATGCAACCTACAATGCACTCTTGGAGATAAAGGATCTGATGTTAAAGGAGACATCCTTATTGAATTCCATAAGTTCACAGTTTCAAGATGCCATAGCCAGCTCCACAAGTCAAATGAAACTTATTGATTCCATGGAGGGAATTCTGAAAGGCATTCAGCAGAAACTAGATAAGGTGCATCTCTCTCATCAAGAAGAGCAGCAGGTCTGCAATGCTTTGAAAGAGAAATATGCTGCAGCAACTGCTGAGCAAAGACGTTGCTATACACTCTTAAAAGCTTTCCAGGAGGAATGTGCAAAGAACGAGAAGCTTCGGACCCAAAATTTCATGTGA 3675 44.41 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSDVAASYIETQLIKAREQQQHQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQQQQQQQQQQQHQQQQQPQQQQQQTQQQQQQRRDGAQLLNGNSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDAAMKQRYGENVGQLLDPNHASILKSAAATSQSSGQVLHGAAGGMSPQVQSRSQQLPGSTPDIKSEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLKGWPLTGLEQLRSGILQQQKPFIQASQSFPQLHQMLTPQHQQQLMLAQQNLTSPSVTDDGRRLRMLLNSRMAKDGLPNSVGDVVPNVGSPLQAGSPLLPRGDSTEMIIKIKMAQMHQQQQQQNSSQQQQQHALSNQQSQSSNHNMPQQEKIGGAGSVTMDGSMSNSFRGNDQVSKNQAGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGSSSKPLMMFSSDGTGTFTSPSNQLADMDRFVEDGSLDDNVESFLSHDDTDPRDPVGRCMDGSKGFTFTEVNSVRASSSKVFSCHFSSDGKLLASGGQDKKAVLWYTENLKPKTSLEEHTSMITDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVTSLDFHPKKDDFICSCDSDGEIRYWNITNGSCAAVFKGGMGQMRFQPRLGRYFAASVDNIVSIFDVETQARLHSLQGHTQKVQSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHELSCNGNKFHSCVFHPTYSTLLVIGCYQSLELWNTTENKTMTLSAHEALISSLAVSTASGLVASASHDKRLRPLPFDQFRRCSEIRDFFIRESSYFPCSSCLLSASVVRVMSEASKSQGTCTERLIEETKCLQPLQVDPDNGVSMDILKEDMDELNQRKVTMVKDLQLLRDRVNKAGANVVQNLMSCLKTLEDLGKQESEFLSTCNSKRSKLQDEIIELEGRLTSDGECSNFLDSLDDLISESEEELNSVKKALRSSLRETLALKRLLDDVPTQTELIQYERRFSELYINIQDKLRQTRRYYATYNALLEIKDLMLKETSLLNSISSQFQDAIASSTSQMKLIDSMEGILKGIQQKLDKVHLSHQEEQQVCNALKEKYAAATAEQRRCYTLLKAFQEECAKNEKLRTQNFM 1224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23773606 23791152 - CaPI482276_08g017540.1 Cam08g1754 133805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1754 1224 ProSiteProfiles Trp-Asp (WD) repeats profile. 771 811 IPR001680 GO:0005515(InterPro)
Cam08g1754 1224 MobiDBLite consensus disorder prediction 250 270 - -
Cam08g1754 1224 SMART WD40_4 849 888 IPR001680 GO:0005515(InterPro)
Cam08g1754 1224 SMART WD40_4 725 761 IPR001680 GO:0005515(InterPro)
Cam08g1754 1224 SMART WD40_4 808 847 IPR001680 GO:0005515(InterPro)
Cam08g1754 1224 SMART WD40_4 639 678 IPR001680 GO:0005515(InterPro)
Cam08g1754 1224 SMART WD40_4 682 722 IPR001680 GO:0005515(InterPro)
Cam08g1754 1224 SMART WD40_4 597 636 IPR001680 GO:0005515(InterPro)
Cam08g1754 1224 SMART WD40_4 764 802 IPR001680 GO:0005515(InterPro)
Cam08g1754 1224 Pfam WD domain, G-beta repeat 641 678 IPR001680 GO:0005515(InterPro)
Cam08g1754 1224 Pfam WD domain, G-beta repeat 685 722 IPR001680 GO:0005515(InterPro)
Cam08g1754 1224 Pfam WD domain, G-beta repeat 767 801 IPR001680 GO:0005515(InterPro)
Cam08g1754 1224 Pfam WD domain, G-beta repeat 853 885 IPR001680 GO:0005515(InterPro)
Cam08g1754 1224 Pfam WD domain, G-beta repeat 601 635 IPR001680 GO:0005515(InterPro)
Cam08g1754 1224 CDD WD40 600 885 - -
Cam08g1754 1224 MobiDBLite consensus disorder prediction 414 540 - -
Cam08g1754 1224 ProSiteProfiles Trp-Asp (WD) repeats profile. 604 645 IPR001680 GO:0005515(InterPro)
Cam08g1754 1224 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 646 681 - -
Cam08g1754 1224 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 689 727 - -
Cam08g1754 1224 Gene3D - 737 959 IPR015943 GO:0005515(InterPro)
Cam08g1754 1224 MobiDBLite consensus disorder prediction 238 293 - -
Cam08g1754 1224 Pfam CCDC93 coiled-coil domain 962 1220 IPR019159 -
Cam08g1754 1224 SMART Lish 8 40 IPR006594 GO:0005515(InterPro)
Cam08g1754 1224 Coils Coil 1015 1035 - -
Cam08g1754 1224 Coils Coil 958 985 - -
Cam08g1754 1224 PANTHER TRANSCRIPTION ACTIVATOR MSS11 3 882 - GO:0005634(PANTHER)
Cam08g1754 1224 Coils Coil 1177 1197 - -
Cam08g1754 1224 SUPERFAMILY WD40 repeat-like 598 885 IPR036322 GO:0005515(InterPro)
Cam08g1754 1224 MobiDBLite consensus disorder prediction 459 519 - -
Cam08g1754 1224 Gene3D - 584 736 IPR015943 GO:0005515(InterPro)
Cam08g1754 1224 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515(InterPro)
Cam08g1754 1224 ProSitePatterns Trp-Asp (WD) repeats signature. 665 679 IPR019775 -
Cam08g1754 1224 MobiDBLite consensus disorder prediction 414 452 - -
Cam08g1754 1224 ProSiteProfiles Trp-Asp (WD) repeats profile. 646 681 IPR001680 GO:0005515(InterPro)
Cam08g1754 1224 Pfam LisH 10 36 IPR006594 GO:0005515(InterPro)
Cam08g1754 1224 Coils Coil 1046 1073 - -
Cam08g1754 1224 ProSiteProfiles Trp-Asp (WD) repeats profile. 689 731 IPR001680 GO:0005515(InterPro)
Cam08g1754 1224 MobiDBLite consensus disorder prediction 89 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1754 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0386 Cam-Chr5:3551302 Cam08g1754 Cam-Chr8:23773606 2.90E-156 dispersed
Cam06g1163 Cam-Chr6:22257279 Cam08g1754 Cam-Chr8:23773606 7.60E-145 dispersed
Cam07g1282 Cam-Chr7:27208984 Cam08g1754 Cam-Chr8:23773606 8.70E-09 dispersed
Cam08g1754 Cam-Chr8:23773606 Cam11g0430 Cam-Chr11:5693492 3.40E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g425 . . . . . . . . . . . . . . . Cpe07g00268 . Bhi04g01023 . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01277 . . . Bma02g00036 . . . . . . . . . . . . . . . . Cla08g01295 Cam08g1754 Cec08g1334 Cco08g1458 Clacu08g1451 . Cre08g1238 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003018 4 4 2 1 1 1 2 1 1 1 1 1 1 1 1 3 1 5 3 1 1 1 1 1 1 1 1 4 3 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52449 PF00400 WD40 1.70E-05 CL0186 Cam TR