Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1795 ATGGACGATGAATCGACTCTGTTTTCCACTTGGGAATATTTGGCTTCCGCTCTAACAGATTATAACACGAATGAGAGAAGAAGCTGTCATGGATGCTGCACTGCATCTGCACTAGGTAATGCGATGGATGGGCCATCTAAAGGTCTGAGAGTTAAAGACCAAGAAGCAAAGAAACAATGCTTACCAGAAAATTGCCCGAGCTCTAGCACATGTGAAATGGACAACAGTACAGTTTGGTCCCAGAGAAGCATGCCACCAGCCCAGTCACAAGATTCTCACAGCAATATTGGGAGCAGTACAGACTTTGTAAACTCTGGACTACTTCTTTGGAATGAGACCAGGAAGCAATGGGTTGGAAATAAAATGTCCGAGAGCCAAAAGCAAGTTCAAGAACCCAAAATAAGCTGGAATGCTACTTATGACAGCTTATTAACAACAAACAAGCCGTTCCCCGAGCCCATACCTCTTGCTGAGATGATAGAGTTTCTTGTTGATGTCTGGGAGCAGGAGGGTCTATATGACTGA 525 44.38 MDDESTLFSTWEYLASALTDYNTNERRSCHGCCTASALGNAMDGPSKGLRVKDQEAKKQCLPENCPSSSTCEMDNSTVWSQRSMPPAQSQDSHSNIGSSTDFVNSGLLLWNETRKQWVGNKMSESQKQVQEPKISWNATYDSLLTTNKPFPEPIPLAEMIEFLVDVWEQEGLYD 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24111802 24115171 + CaPI482276_08g017950.1 Cam08g1795 133846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1795 174 MobiDBLite consensus disorder prediction 76 96 - -
Cam08g1795 174 PANTHER OS07G0479600 PROTEIN 26 174 - -
Cam08g1795 174 Pfam Gag1-like, clamp domain 69 174 IPR025124 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1795 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1225 Cam-Chr8:18623661 Cam08g1795 Cam-Chr8:24111802 1.30E-19 dispersed
Cam08g1795 Cam-Chr8:24111802 Cam10g1970 Cam-Chr10:33631748 1.10E-19 dispersed
Cam11g0243 Cam-Chr11:3945635 Cam08g1795 Cam-Chr8:24111802 6.90E-16 wgd
Cam07g1297 Cam-Chr7:27337109 Cam08g1795 Cam-Chr8:24111802 5.80E-16 wgd
Cam08g1795 Cam-Chr8:24111802 Cam09g0277 Cam-Chr9:3317206 5.80E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g481 . . . . . . . . . Cmo12g00286 . . . Car12g00318 . Cpe07g00295 . Bhi04g00955 . . . Hepe10g0252 . . . . . . . . . . . Cone17ag1022 . . . . . . . . . . . . . . . . . Cma12g00337 . . . . . . . . . . . Cla08g01333 Cam08g1795 Cec08g1374 . Clacu08g1489 . . . . Chy03g01121 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012949 0 5 0 0 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 4 1 0 28