Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1821 ATGCCGTCTCACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCAATTCCTCACTGGATCCGTCTTAGGACCGACAATACCATCAGGTACAATGCGAAGCGAAGGCACTGGCGCCGCACTAAGCTCGTTCAGTTTGGTGCCATTTCTTCTCACGCTAGTTTGGAGTTATATTATGGTCTTGATCATTCAAGTATTCGTGTGAATGAGAGGAAGGGTTCCCGCTTCTTCTTCGCTGGTCGTACCCTCGCAGCCGGCTCCCGACTCCCCAAGATGCCGTCTCACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCTATTCCTCACTGGATCCGTCTTAGAACCGACAATACCATCAGGTACAATGCGAAGCGAAGGCACTGGCGCCGCACTAAGCTCGGATACCCCTGTATGGATGATTGTATCCTGACGCTTAATAAATTTGCTAAATTACCATTTCAGCCCCAACACAAAGAACAGATCCAACGAGTTACTTGTAGTTTGCATCGAAGTCCCTCCTCCGTTAACAAATTGCCCCTCGGACCCATCGCCTTCTCTCCTCCGCCTCGTTCTCTCTGTGGACCTCAATCTCCATTCTCATTGATCCCATTTCCATTAAGGTCCATGGCGTCCTCTATCCTCCCTCTTGCTTCCGCCTCCCCTTCCGCTTCACGTTCCTCACTTGAAAACAAGAAGGGGAAGTCGAACCTTGGAAGTAGCTGTGTAAGCTTTGATCATGACAAAAACCATCCATTCGCGAAGACGAAGTCCTTGAGCAGGATCTCTATGGTTGCTTCAGTTAATGTCTCTCGGTTTGAGGGGATAACGATGGCCCCTCCTGATCCAATTCTTGGAGTTTCCGAGGCTTTCAAAGCAGATACGCACGGAAACAAGCTCAACTTGGGAGTTGGTGCCTACCGCACAGAAGAACTACAACCTTATGTGCTTGATGTTGTGAAGAAGGTTGAGACACTTATGCTGGAGAGGGGAGATAACAAAGAGTATCTCCCAATTGAAGGTCTGGCAGCGTTTAATAAGGCGACAGCAGAGTTATTATTTGGAGCTGATAACCCAGTCATTAAGCAGCAACGAGTTGCAACTATTCAAGGTCTGTCAGGGACTGGTTCTCTTAGACTAGCGGCTGCTCTTATAGAACGATACTTCCCTGGTGCAAAAGTTCTTATATCTTCTCCAACTTGGGGGAATCATAAAAATATTTTCAATGATGCGAGAGTTCCATGGTCTGAGTATCGATATTATGACCCTAAAACAGTTGGTTTGGATTTTGAAGGGATGATGTCTGATATTAAGGCAGCACCTGAAGGATCTTTTGTGCTGCTTCATGGTTGTGCTCACAACCCAACTGGCATTGACCCAACACCTGAGCAGTGGGAAAAAATTGCTGATGTCATTCAGGAAAAGAACCACATTCCGTTTTTTGATGTTGCATATCAGGGTTTTGCTAGTGGAAGCCTTGATGCAGATGCAGCATCTGTTAGGCTGTTTGCTGCTCGTGGTTTGGAGCTTTTGGTTGCTCAATCCTACAGTAAAAATCTTGGTCTTTATGCTGAAAGGATTGGGGCTATCAATGTCGTCTGCTCATCCACAGATTCAGCAACAAGGGTAAAGAGCCAGTTGAAGAGACTTGCTCGACCAATGTACTCAAATCCACCAGTTCATGGGGCTAGAATTGTTGCTAACATTGTTGGAGATCCAGCACTATTTAACGAGTGGAAAGCAGAAATGGAAATGATGGCTGGAAGAATTAAGAATGTTAGACAGAAGCTCTATGATAGTCTCTGTGCAAAAGATAAAAGTGGGAAAGATTGGTCCTTTATACTCAAGCAGATTGGCATGTTCTCATTCACAGGCTTGAGCAAAGTTCAGAGTGATAATATGACGGACAAGTGGCATGTATACATGACGAAGGATGGACGGATATCTTTGGCTGGATTGTCGTTAGCTAAGTGTGAATATCTCGCAGATGCCATCATTGATTCATTCCACAATGTACGATTAGCCGTTGTCATATTATGTATTCCATACTATGATAATACGAACACTGAAGAAACTAGAGATGAACGAAAAAGAGAGTGA 2136 45.22 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLVQFGAISSHASLELYYGLDHSSIRVNERKGSRFFFAGRTLAAGSRLPKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGYPCMDDCILTLNKFAKLPFQPQHKEQIQRVTCSLHRSPSSVNKLPLGPIAFSPPPRSLCGPQSPFSLIPFPLRSMASSILPLASASPSASRSSLENKKGKSNLGSSCVSFDHDKNHPFAKTKSLSRISMVASVNVSRFEGITMAPPDPILGVSEAFKADTHGNKLNLGVGAYRTEELQPYVLDVVKKVETLMLERGDNKEYLPIEGLAAFNKATAELLFGADNPVIKQQRVATIQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMMSDIKAAPEGSFVLLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDADAASVRLFAARGLELLVAQSYSKNLGLYAERIGAINVVCSSTDSATRVKSQLKRLARPMYSNPPVHGARIVANIVGDPALFNEWKAEMEMMAGRIKNVRQKLYDSLCAKDKSGKDWSFILKQIGMFSFTGLSKVQSDNMTDKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSFHNVRLAVVILCIPYYDNTNTEETRDERKRE 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24294473 24304206 - CaPI482276_08g018210.1 Cam08g1821 133872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1821 711 FunFam 60S ribosomal protein-like L39 98 148 - -
Cam08g1821 711 Gene3D Aspartate Aminotransferase, domain 1 288 677 IPR015422 -
Cam08g1821 711 Gene3D - 343 584 IPR015421 -
Cam08g1821 711 Pfam Ribosomal L39 protein 9 49 IPR000077 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cam08g1821 711 Pfam Ribosomal L39 protein 106 146 IPR000077 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cam08g1821 711 FunFam Aspartate aminotransferase 570 677 - -
Cam08g1821 711 Hamap Large ribosomal subunit protein eL39 [rpl39e]. 1 52 IPR000077 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cam08g1821 711 Pfam Aminotransferase class I and II 310 677 IPR004839 GO:0009058(InterPro)|GO:0030170(InterPro)
Cam08g1821 711 SUPERFAMILY Ribosomal protein L39e 3 49 IPR023626 -
Cam08g1821 711 Gene3D Ribosomal protein L39e 98 148 IPR023626 -
Cam08g1821 711 SUPERFAMILY PLP-dependent transferases 283 679 IPR015424 -
Cam08g1821 711 ProSitePatterns Ribosomal protein L39e signature. 30 46 IPR020083 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cam08g1821 711 Gene3D Ribosomal protein L39e 1 50 IPR023626 -
Cam08g1821 711 ProSitePatterns Ribosomal protein L39e signature. 127 143 IPR020083 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cam08g1821 711 PANTHER ASPARTATE AMINOTRANSFERASE 267 684 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Cam08g1821 711 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 527 540 IPR004838 GO:0003824(InterPro)|GO:0009058(InterPro)|GO:0030170(InterPro)
Cam08g1821 711 PRINTS Aspartate aminotransferase signature 458 477 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Cam08g1821 711 PRINTS Aspartate aminotransferase signature 626 644 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Cam08g1821 711 PRINTS Aspartate aminotransferase signature 489 501 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Cam08g1821 711 PRINTS Aspartate aminotransferase signature 557 582 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Cam08g1821 711 FunFam 60S ribosomal protein-like L39 1 50 - -
Cam08g1821 711 Hamap Large ribosomal subunit protein eL39 [rpl39e]. 98 149 IPR000077 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cam08g1821 711 FunFam Aspartate aminotransferase 343 584 - -
Cam08g1821 711 CDD AAT_like 312 677 - -
Cam08g1821 711 SUPERFAMILY Ribosomal protein L39e 100 147 IPR023626 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1821 K00811 - - csv:101213342 871.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1821 Cam-Chr8:24294473 Cam11g1434 Cam-Chr11:27050831 9.10E-129 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g325 Blo01g01369 Blo12g00761 . Bda03g00424 . Bpe02g00176 Bma04g00400 Bma01g02550 . . Cma01g01602 . Car09g00487 . . . Cpe06g00422 . . . . . . . . . . . . . . Cone4ag1531 Cone7ag1422 . . Lsi04g02230 Csa03g04441 Chy04g00259 . . . . . . Bpe04g00072 . . Sed05g1604 Cmo01g01649 Cmo09g00545 Cma09g00555 . Car01g01222 . . Cpe02g00376 Bhi09g02426 Tan01g3784 Cmetu04g1897 . Hepe01g2123 Mch11g0661 . Cla08g01356 Cam08g1821 Cec08g1400 Cco08g1530 Clacu08g1516 . Cre08g1302 . . . Cme04g00290
Vvi4g534 . . . Bda03g00085 . . . . . . . . . . Sed11g1156 . . Bhi04g00034 Tan02g2749 Cmetu03g1805 . . . Lcy13g1814 . . . . . . . . Cone7ag1676 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01356 Cam08g1821 Cec08g1400 Cco08g1530 Clacu08g1516 . Cre08g1302 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006495 1 2 1 0 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 2 1 37