Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1823 ATGGCCAGGCCTCAACAGCGTTATCGAGGCGTTCGTCAAAGACATTGGGGTTCTTGGGTCTCCGAAATTCGTCACCCTTTATTGAAGACCAGAATTTGGCTTGGTACTTTCGAAACGGCTGAAGATGCTGCTAAAGCTTACGATGAAGCTGCTCGCTTAATGTGCGGTCCAAGAGCAAGAACTAATTTCCCTTTCAACGCAAATGATTCCAATTCCTCTTCTTCTAAACTTCTCTCTCCCAATTTGACTGCAAAACTCCACCGTTGCTACATGGCGTCTCTTCATTTGCAGAAACCCGCCACCCATCGCTTCAATTCCGGTGCCGACGCGGCCGGGATTAAGCCCTTCACGGCGGAGGCAAAGACCCAAACGGAAACCGCGCATCAGCCTTTTGTGGCTCTGGAAGAGGATCATATTGAACAGATGATTGAGGAATTGATTCATTATGGGTCTGTTGAGCTCTGTTCTATTGTACCACCGTCTCCGGCGTTTTGA 495 48.69 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAAKAYDEAARLMCGPRARTNFPFNANDSNSSSSKLLSPNLTAKLHRCYMASLHLQKPATHRFNSGADAAGIKPFTAEAKTQTETAHQPFVALEEDHIEQMIEELIHYGSVELCSIVPPSPAF 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24320777 24321364 + CaPI482276_08g018230.1 Cam08g1823 133874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1823 164 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Cam08g1823 164 CDD AP2 6 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1823 164 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1823 164 FunFam Ethylene-responsive transcription factor 2 6 66 - -
Cam08g1823 164 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1823 164 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1823 164 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 107 IPR050913 -
Cam08g1823 164 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1823 164 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1823 164 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1815 Cam-Chr5:27029551 Cam08g1823 Cam-Chr8:24320777 2.40E-52 dispersed
Cam07g1318 Cam-Chr7:27548394 Cam08g1823 Cam-Chr8:24320777 2.40E-38 dispersed
Cam08g1823 Cam-Chr8:24320777 Cam09g0319 Cam-Chr9:3562201 2.10E-44 dispersed
Cam08g1822 Cam-Chr8:24313592 Cam08g1823 Cam-Chr8:24320777 9.30E-54 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52456 PF00847 AP2 9.50E-12 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1823 - - - 0.0