Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam08g1857 | ATGGTGGTTCCGATGAAGAGGAGCATGAACACCAACGCCTGGGTTTTCTTAAAGCCTCTTACTTGGAAGTTATGGCTCGTTACAGCCTGCTCCTTCCTCTTCGTCGCAATTGTTGTTTGGATACTTGAACATCGAATCAACGAAGACTTCAATGGTCCTATTTCTGATCAAATTTGTACCAGCCTTTGGTACTCCTTTTCCACTATGGTTTTTGCCCATCGGGAGCGTACATTCAACAACGGGACCAAACTCGTGGTAATAATATGGCTGTTTGTGGTTCTGATAATTACACAAAGTTACACTGCAAGTTTGGCCTCACTTTTGACGGTTCAAGAGCTCAAACCAACCATAACTGATATAAATCAGCTTCTTAAAAATGGAGAGAACATTGGGTATCAAGGAGGTTCTTTTGTGTACGAGATTCTTAAGTCGTTGAAGTTCCATGATTCCCAACTCAAAACTTACCAATCTTCCGAAGAAATGCACCAACTTTTCACTAAAGGAACCATCAACGGCGGAATTTCTGCTGCAGTGGATGAAATGCCTTATATTAAGTTGTTTCTTGCCAAGTATTGCTCACAATATACCACTACTGAACCCACCTACAAAGCCGATGGATTTGGTTTTGGTTTTCCGACAGGGTCGGCGTTGGTACCTGATATCTCGAGGGCAATTTTGAAGGTAACGGAGGGCGATAGAATAAGAGAGATCGAAAACGCATGGTTCAAAAGGATGAGAGAATGCTCAGCTTCGGAAGCCGCTGAACTGTCTTCCACCCGCCTCAACATCGACAGTTTTTGGTTACTTTTTGCCTTAACCGCCCTTGTTTCCATAATCTCTGTGTCCATTTACATTGGCCTTTTTCTCTATGAAGAATTGCCGCTGCGTTGGAGAGCAAATTCTTCCATCACTGCAACATTAGCCGATTTGGGTTCGAAGTTCTTGAGTACAGATCCCAGAGTTCTATCTTTTCTAGAAAATTGCCGACGACGAGATTGA | 999 | 43.04 | MVVPMKRSMNTNAWVFLKPLTWKLWLVTACSFLFVAIVVWILEHRINEDFNGPISDQICTSLWYSFSTMVFAHRERTFNNGTKLVVIIWLFVVLIITQSYTASLASLLTVQELKPTITDINQLLKNGENIGYQGGSFVYEILKSLKFHDSQLKTYQSSEEMHQLFTKGTINGGISAAVDEMPYIKLFLAKYCSQYTTTEPTYKADGFGFGFPTGSALVPDISRAILKVTEGDRIREIENAWFKRMRECSASEAAELSSTRLNIDSFWLLFALTALVSIISVSIYIGLFLYEELPLRWRANSSITATLADLGSKFLSTDPRVLSFLENCRRRD | 332 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 24627276 | 24628611 | - | CaPI482276_08g018570.1 | Cam08g1857 | 133908 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam08g1857 | 332 | SMART | GluR_14 | 36 | 244 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Cam08g1857 | 332 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 1 | 293 | IPR015683 | GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER) | |
Cam08g1857 | 332 | Pfam | Ligand-gated ion channel | 21 | 275 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Cam08g1857 | 332 | Gene3D | - | 189 | 252 | - | - | |
Cam08g1857 | 332 | Gene3D | - | 9 | 159 | - | - | |
Cam08g1857 | 332 | FunFam | Glutamate receptor | 13 | 143 | - | - | |
Cam08g1857 | 332 | SUPERFAMILY | Periplasmic binding protein-like II | 96 | 244 | - | - | |
Cam08g1857 | 332 | FunFam | Glutamate receptor 2.7 | 150 | 250 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam08g1857 | Cam-Chr8:24627276 | Cam08g1934 | Cam-Chr8:25269149 | 1.20E-70 | dispersed | |
Cam08g1857 | Cam-Chr8:24627276 | Cam08g1859 | Cam-Chr8:24630675 | 4.90E-69 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam08g1857 | K05387 | - | csv:101203550 | 479.559 |