Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1857 ATGGTGGTTCCGATGAAGAGGAGCATGAACACCAACGCCTGGGTTTTCTTAAAGCCTCTTACTTGGAAGTTATGGCTCGTTACAGCCTGCTCCTTCCTCTTCGTCGCAATTGTTGTTTGGATACTTGAACATCGAATCAACGAAGACTTCAATGGTCCTATTTCTGATCAAATTTGTACCAGCCTTTGGTACTCCTTTTCCACTATGGTTTTTGCCCATCGGGAGCGTACATTCAACAACGGGACCAAACTCGTGGTAATAATATGGCTGTTTGTGGTTCTGATAATTACACAAAGTTACACTGCAAGTTTGGCCTCACTTTTGACGGTTCAAGAGCTCAAACCAACCATAACTGATATAAATCAGCTTCTTAAAAATGGAGAGAACATTGGGTATCAAGGAGGTTCTTTTGTGTACGAGATTCTTAAGTCGTTGAAGTTCCATGATTCCCAACTCAAAACTTACCAATCTTCCGAAGAAATGCACCAACTTTTCACTAAAGGAACCATCAACGGCGGAATTTCTGCTGCAGTGGATGAAATGCCTTATATTAAGTTGTTTCTTGCCAAGTATTGCTCACAATATACCACTACTGAACCCACCTACAAAGCCGATGGATTTGGTTTTGGTTTTCCGACAGGGTCGGCGTTGGTACCTGATATCTCGAGGGCAATTTTGAAGGTAACGGAGGGCGATAGAATAAGAGAGATCGAAAACGCATGGTTCAAAAGGATGAGAGAATGCTCAGCTTCGGAAGCCGCTGAACTGTCTTCCACCCGCCTCAACATCGACAGTTTTTGGTTACTTTTTGCCTTAACCGCCCTTGTTTCCATAATCTCTGTGTCCATTTACATTGGCCTTTTTCTCTATGAAGAATTGCCGCTGCGTTGGAGAGCAAATTCTTCCATCACTGCAACATTAGCCGATTTGGGTTCGAAGTTCTTGAGTACAGATCCCAGAGTTCTATCTTTTCTAGAAAATTGCCGACGACGAGATTGA 999 43.04 MVVPMKRSMNTNAWVFLKPLTWKLWLVTACSFLFVAIVVWILEHRINEDFNGPISDQICTSLWYSFSTMVFAHRERTFNNGTKLVVIIWLFVVLIITQSYTASLASLLTVQELKPTITDINQLLKNGENIGYQGGSFVYEILKSLKFHDSQLKTYQSSEEMHQLFTKGTINGGISAAVDEMPYIKLFLAKYCSQYTTTEPTYKADGFGFGFPTGSALVPDISRAILKVTEGDRIREIENAWFKRMRECSASEAAELSSTRLNIDSFWLLFALTALVSIISVSIYIGLFLYEELPLRWRANSSITATLADLGSKFLSTDPRVLSFLENCRRRD 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24627276 24628611 - CaPI482276_08g018570.1 Cam08g1857 133908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1857 332 SMART GluR_14 36 244 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cam08g1857 332 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 293 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cam08g1857 332 Pfam Ligand-gated ion channel 21 275 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cam08g1857 332 Gene3D - 189 252 - -
Cam08g1857 332 Gene3D - 9 159 - -
Cam08g1857 332 FunFam Glutamate receptor 13 143 - -
Cam08g1857 332 SUPERFAMILY Periplasmic binding protein-like II 96 244 - -
Cam08g1857 332 FunFam Glutamate receptor 2.7 150 250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1857 Cam-Chr8:24627276 Cam08g1934 Cam-Chr8:25269149 1.20E-70 dispersed
Cam08g1857 Cam-Chr8:24627276 Cam08g1859 Cam-Chr8:24630675 4.90E-69 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1857 K05387 - csv:101203550 479.559