Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1874 ATGCTCGCCCTTCTCGTTTCAAATCGAGAGAGAAGGGCGAAGCACGGGCGACATGGGCGACCGGTAGCCGATGGAGCCATTACAGATGTGACCATGTCGGCTCTTTGTCCCGGTCAAGACGAGTGTTCTCTCGCTATTTACTTCACCGGCTTTCAACAAATCGTGACGGGGGTTGGGGCGTTGCTAATGATGCCATTAGTGGGAAACTTGTCGGACAAGTATGGAAGAAAGACTATGCTCACAATTCCTATGATTCTCACCGTAATTCCCCTGGGGATATTAGGGTATGGGAGATCGAGGGATTTGTTCTACGTTTATTTTGTGTTCAAGTGTGTGACGAGTACGGTTTGTGAAGGGAGCGTTCAGTGTTTGGCAATTGCTCATGCGGCTGACAATGTACCGGAGCACCGGAGAGCCTCTGCATTCGGACTACTATCCGCCATTGGATCTTCTGCTTTCGTCTGCGGGACTCTCTGTGCTCGTTTTCTCTCCATTCCGTCCACTTTTCAGGTAGCGGCTTTCATGGCGGCTGTGGCGGCAATTTATATGAGGATTTTCCTTACTGATTCTGTCGCCGATTGCAATCTTTCTGCTCCCTTACTGTCTGGGGAGAATGTAGAATCTGTTTCTTCGGATACAGTTTCGCCCAAAAAAGAACAAATTATTTCGACCTTGCCTTCACTGAAGGACCTTTTTGCACTGTTGAAGACTAGCTTGACATTTTTACAAGCGGCCATTGTTGCATTTTTTTGCAATCTTGCTGATGTTGGCCTTCATGCTTCTATACTGTACTATTTAAAAGCCAGATTTCACTTTAACAAGGATAGGTTTGCTGATTTGATGGTGATTTCTGGGGCTGCTTCGACTATTTCACAGCTACTTTTAATGCCCATCTTGGTTCCTGCTCTAGGAGAGCACAGGCTGCTCTCAGTTGGGCTCTTTTTCAACTGCATTCATATGCTTCTTTACAGCTTTGCTTGGGCTGACTGGGTTGCCTACGTTGCTGGAATGTTTTCCATTTGGTTTATTTTCTGGCGGCCTTGTCTACAAAGCATAGTATCAAAGCAAGTTGGTGCAAGCGAGCAGGGTAAGGCTCAAGGATGCATTTCAGGCATATCTTCATTTGCCAACGTTGTTTCTCCATTGGTATTCTCCCCTTTAACAGCTTTGTTTCTCTCTGAAAACGCTCCATTTCATTTCCCTGGATTTAGCATTATGTGCGCTGGATCTGCAGCGATGATGGCATTTGGTCAGAGTATGATGATTAGGGATCCTATCAAAGCCAGCAGTAGCAGCCATGTGGAAGTCTAG 1311 46.38 MLALLVSNRERRAKHGRHGRPVADGAITDVTMSALCPGQDECSLAIYFTGFQQIVTGVGALLMMPLVGNLSDKYGRKTMLTIPMILTVIPLGILGYGRSRDLFYVYFVFKCVTSTVCEGSVQCLAIAHAADNVPEHRRASAFGLLSAIGSSAFVCGTLCARFLSIPSTFQVAAFMAAVAAIYMRIFLTDSVADCNLSAPLLSGENVESVSSDTVSPKKEQIISTLPSLKDLFALLKTSLTFLQAAIVAFFCNLADVGLHASILYYLKARFHFNKDRFADLMVISGAASTISQLLLMPILVPALGEHRLLSVGLFFNCIHMLLYSFAWADWVAYVAGMFSIWFIFWRPCLQSIVSKQVGASEQGKAQGCISGISSFANVVSPLVFSPLTALFLSENAPFHFPGFSIMCAGSAAMMAFGQSMMIRDPIKASSSSHVEV 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24750524 24760916 - CaPI482276_08g018740.1 Cam08g1874 133925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1874 436 PRINTS Tetracycline resistance protein signature 55 71 IPR001958 GO:0022857(InterPro)
Cam08g1874 436 PRINTS Tetracycline resistance protein signature 365 388 IPR001958 GO:0022857(InterPro)
Cam08g1874 436 PRINTS Tetracycline resistance protein signature 305 326 IPR001958 GO:0022857(InterPro)
Cam08g1874 436 Pfam Major Facilitator Superfamily 51 381 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Cam08g1874 436 Gene3D MFS general substrate transporter like domains 41 418 IPR036259 -
Cam08g1874 436 SUPERFAMILY MFS general substrate transporter 45 416 IPR036259 -
Cam08g1874 436 CDD MFS_SLC46_TetA_like 42 421 - -
Cam08g1874 436 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 29 416 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1874 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1873 Cam-Chr8:24736048 Cam08g1874 Cam-Chr8:24750524 5.10E-191 tandem
Cam08g1874 Cam-Chr8:24750524 Cam08g1875 Cam-Chr8:24761081 4.80E-189 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g159 . . . . . . . . Cmo05g00330 . . . . . . . . . . . . . . . Cla08g01397 Cam08g1874 Cec08g1451 Cco08g1585 Clacu08g1567 . Cre08g1351 . . . . . . . Cme03g01539 Blo17g00734 . Bda08g01188 . . Bpe05g00163 . . . . . . Cma05g00327 Car05g00274 . . . . . . . . . . . . . . . . . Lsi08g01291 . Chy03g01047 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000412 3 14 3 1 3 5 3 5 5 4 3 5 2 4 5 2 5 1 3 5 4 3 4 4 3 6 3 4 9 2 123