Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1884 ATGTCTAATAATCTCATCTTCACCTTTATTCTCTTTTTTTCCTCCCTTCTTCCCTCTTTCAATGCCTTGAGCCATCGTTACTATGACCACACATGCCCTAATCTCGAGTCCATTGTTGCTCGAGAAGTCCACTTAGCCACTGCCAACGACAAGACCGTCCCTGCTGCATTGCTTCGAATGCACTTCCATGATTGTTTCATTAGAGGTTGTGATGGCTCTGTGCTTCTCGACTCCAAGGGGAAGAACACAGCCGAAAAAGATGGCCCTCCCAACATATCCCTCCATGCTTTTTATGTCATTGACAATGCCAAGAAAGCTATTGAATCTACCTGTCCTGGCGTCGTTTCTTGCGCTGATATCTTAGCCCTCGCTGCTCGAGATGCCGTTGTTTTGTCTGGAGGTCCTCATTGGGAAGTTCCAAAAGGAAGAAAAGATGGAAGAATCTCAAAAGCTATTGAAACTAGACAATTACCAGCTCCCACATTCAACTTCTCTCAGCTCCAACAAAGCTTCTCCCAAAGGGGCCTTTCTTTACAAGATCTTGTTGCTCTTTCAGGCGGCCACACTCTTGGATTTGCTCATTGCTCGTCGTTCCAAAACCGAATCCACAACTTCAACTCGAGCCTCGACGTCGACCCGTCATTGCAGCCGGCATTTGCGGCCAGCCTCCGGAGCATATGTCCGGCGAGAAACAAGGTGAAAAATGCGGGTTCGGCCATGGATTCAACTTCCACAGTATTTGACAATGTATATTTCAAGCTTCTTCTACAAGGGCGGAGCATTTTTTCATCAGATCAATCTTTGCTTTCAAATCCCAAAACAAAAGCTTTGGTTTCAAGATTTGCGAATGAACAACATCTCTTTGAGAAGGCTTTTGTGAAGTCAATGGTGAAGATGAGTCAGATCGCCGGCGCCGGCCAAGAAGTCCGGCTAAACTGCAGGGTGGTCAGATGA 954 46.54 MSNNLIFTFILFFSSLLPSFNALSHRYYDHTCPNLESIVAREVHLATANDKTVPAALLRMHFHDCFIRGCDGSVLLDSKGKNTAEKDGPPNISLHAFYVIDNAKKAIESTCPGVVSCADILALAARDAVVLSGGPHWEVPKGRKDGRISKAIETRQLPAPTFNFSQLQQSFSQRGLSLQDLVALSGGHTLGFAHCSSFQNRIHNFNSSLDVDPSLQPAFAASLRSICPARNKVKNAGSAMDSTSTVFDNVYFKLLLQGRSIFSSDQSLLSNPKTKALVSRFANEQHLFEKAFVKSMVKMSQIAGAGQEVRLNCRVVR 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24838016 24839294 - CaPI482276_08g018840.1 Cam08g1884 133935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1884 317 PANTHER PEROXIDASE 25-RELATED 24 313 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Cam08g1884 317 FunFam Peroxidase 158 299 - -
Cam08g1884 317 SUPERFAMILY Heme-dependent peroxidases 23 316 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam08g1884 317 CDD secretory_peroxidase 23 316 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cam08g1884 317 FunFam Peroxidase 26 163 - -
Cam08g1884 317 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
Cam08g1884 317 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam08g1884 317 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam08g1884 317 PRINTS Haem peroxidase superfamily signature 54 68 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam08g1884 317 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam08g1884 317 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam08g1884 317 Pfam Peroxidase 40 283 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam08g1884 317 ProSiteProfiles Plant heme peroxidase family profile. 22 317 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam08g1884 317 Gene3D Peroxidase, domain 2 158 299 - -
Cam08g1884 317 PRINTS Plant peroxidase signature 294 307 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam08g1884 317 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam08g1884 317 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam08g1884 317 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam08g1884 317 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam08g1884 317 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam08g1884 317 PRINTS Plant peroxidase signature 56 76 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam08g1884 317 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam08g1884 317 PRINTS Plant peroxidase signature 32 51 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam08g1884 317 Gene3D - 26 316 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1884 Cam-Chr8:24838016 Cam09g1665 Cam-Chr9:28722119 2.20E-66 dispersed
Cam01g2101 Cam-Chr1:34007564 Cam08g1884 Cam-Chr8:24838016 1.00E-119 transposed
Cam04g0295 Cam-Chr4:10860401 Cam08g1884 Cam-Chr8:24838016 1.60E-72 transposed
Cam05g0924 Cam-Chr5:8375598 Cam08g1884 Cam-Chr8:24838016 5.90E-97 transposed
Cam05g1770 Cam-Chr5:26540945 Cam08g1884 Cam-Chr8:24838016 4.00E-63 transposed
Cam01g2091 Cam-Chr1:33929674 Cam08g1884 Cam-Chr8:24838016 2.70E-11 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1884 K00430 - csv:101214403 562.377