Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1890 ATGACGGAGTACATAAATTTGAACCTTAGACTTGGACCTCGAGGGAACGAGCTTACACTCATGACAAGGCAATCGTCTCTAGTTAGAAAGCTCTTGGGGAAGCAGCAAGAGCCCCTCATGGCTTATTCTCGTGGACACGACTTCTTGTTTTGCAATTTGTGTGGAACCATGTTGTCGTTCAGCTCAACTAAGTATGTCGAGTGTCCTTTATGCAAGTCTAGGCGAAGTGCAAAAGAGATCATCGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGAAATTAGAAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAATGCAGCTAGCAAAGGAAAGGAGGAGATGTGAAAAATGTGGAAATGATGAAGCTTGGTTTGAGAGCAGACAGATGAGATCTGCTGATGAAGGGCAAACCACATTTTATACCTGCACCAAATGCCATCATCAGACCAGAGAGAATTGA 468 42.52 MTEYINLNLRLGPRGNELTLMTRQSSLVRKLLGKQQEPLMAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24876438 24881318 + CaPI482276_08g018900.1 Cam08g1890 133941

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1890 155 CDD Zn-ribbon_RPA12 115 155 IPR034004 -
Cam08g1890 155 Gene3D - 101 154 - -
Cam08g1890 155 Pfam Transcription factor S-II (TFIIS) 116 151 IPR001222 GO:0003676(InterPro)|GO:0006351(InterPro)|GO:0008270(InterPro)
Cam08g1890 155 PANTHER DNA-DIRECTED RNA POLYMERASE 49 155 IPR012164 GO:0001054(PANTHER)|GO:0003899(InterPro)|GO:0003899(PANTHER)|GO:0005736(PANTHER)|GO:0006351(InterPro)|GO:0006363(PANTHER)
Cam08g1890 155 SMART Cys4_2 115 154 IPR001222 GO:0003676(InterPro)|GO:0006351(InterPro)|GO:0008270(InterPro)
Cam08g1890 155 SUPERFAMILY Zinc beta-ribbon 94 155 - -
Cam08g1890 155 ProSiteProfiles Zinc finger TFIIS-type profile. 113 153 IPR001222 GO:0003676(InterPro)|GO:0006351(InterPro)|GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1890 K03000 - - csv:101217365 221.09
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1145 . . . . . . . . Cmo05g00320 . . . . . . . . Bhi04g00126 . . . . . . Cla08g01411 Cam08g1890 Cec08g1467 Cco08g1600 Clacu08g1582 . Cre08g1365 . . . Cone20ag0066 . . . . . . . Bda01g01539 Bpe02g01736 . . . . . . . Cma05g00317 Car05g00264 . Cpe11g00265 . . . . . . . . . . . . . . . Lsi08g01306 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009165 1 5 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 3 1 34