Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1895 ATGGGATTTCTACAAACATATTTTCTTTCTCCTTCTTCTGTTTTGTTTCACTCTCTGCTTTTGATCATCTTCTTTAGAGGCGTTTCTGGAGCTGGATTTACATTTGTAAATAGATGTGATTACACTGTTTGGCCGGGAATTCTTGGAAACACCCAATTGGAATCCACTGGATTCGAGCTCTCTCCGGGGGCGGAGCGTTCCTTCCACGCGCCGCCGGGTTGGTCCGGCAGATTCTGGGGTCGAACCGGCTGTTCGTTCGACCCGGCCACTGGTCAGGGCAGTTGTCAAACGGCTGATTGTGCATCAAACCAAATCGAATGCAATGGCGCCGGAGCTACCCCGCCGGCGACCCTAGCCGAGTTTACGATCGGCGGCGGTGCCGGCGCGCAGGACTTTTACGATGTCAGCTTGGTCGACGGCTACAACATTCCGATGGTGGTGGATGCCACTGGTGGGAGTGGCGCGTGTCAGTCGACTGGGTGCGCGGCGGAGCTGAGCCGGCGGTGCCCTGCGGAACTACGGGCTGGCGAGGGAAAGGCGTGTAGAAGCGCGTGTGAAGCGTTTGGGAACCCGGAATACTGCTGCAGCGGCGCGTATAACTCACCCGCTGCCTGTAAGCCGTCGATGTACTCGGAAATGTTCAAATCGGCTTGCCCGAAATCGTATAGCTACGCCTTTGATGACGCAACAAGCACTTTTACTTGTAGTGGAGCAGATTATACCATTACATTCTGCCCTTCATCAACAAGCCAAAAATCAGAAAGAGACCCGTCGAGCCGAGGTGATGGACCGTTGGTGTCGTTCGACAGTTCATGGCTGCCGGACTTTATTACCGGAGAAGGATCATCCAAAACAATGTGGTTGCTTGACTTTGAATCTGAAAGATATGGTTGGTGGGTGGTGGTGGAGGTTGGCGGTGGTGGTGGTGGTGGTTGTGGTGGCGGTGGTGGGGAACCCGCTGTAAAGAACCAACTTTGCTGGATTATGAAGATTGTTGCCAAAGCTCTAGCAACAATGCTTGAAGGACTCGTCTTTACAGGAGCTGTTTGA 1050 53.33 MGFLQTYFLSPSSVLFHSLLLIIFFRGVSGAGFTFVNRCDYTVWPGILGNTQLESTGFELSPGAERSFHAPPGWSGRFWGRTGCSFDPATGQGSCQTADCASNQIECNGAGATPPATLAEFTIGGGAGAQDFYDVSLVDGYNIPMVVDATGGSGACQSTGCAAELSRRCPAELRAGEGKACRSACEAFGNPEYCCSGAYNSPAACKPSMYSEMFKSACPKSYSYAFDDATSTFTCSGADYTITFCPSSTSQKSERDPSSRGDGPLVSFDSSWLPDFITGEGSSKTMWLLDFESERYGWWVVVEVGGGGGGGCGGGGGEPAVKNQLCWIMKIVAKALATMLEGLVFTGAV 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24923322 24927589 - CaPI482276_08g018950.1 Cam08g1895 133946

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1895 349 ProSiteProfiles Thaumatin family profile. 30 246 IPR001938 -
Cam08g1895 349 PANTHER OS03G0233200 PROTEIN 20 246 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Cam08g1895 349 SMART tha2 33 246 IPR001938 -
Cam08g1895 349 SUPERFAMILY Osmotin, thaumatin-like protein 33 247 IPR037176 -
Cam08g1895 349 CDD TLP-PA 33 245 - -
Cam08g1895 349 FunFam THAUMATIN-LIKE PROTEIN 1 31 246 - -
Cam08g1895 349 PRINTS Pathogenesis-related protein signature 131 147 IPR001938 -
Cam08g1895 349 PRINTS Pathogenesis-related protein signature 32 44 IPR001938 -
Cam08g1895 349 PRINTS Pathogenesis-related protein signature 56 65 IPR001938 -
Cam08g1895 349 PRINTS Pathogenesis-related protein signature 77 88 IPR001938 -
Cam08g1895 349 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Cam08g1895 349 Pfam Thaumatin family 37 246 IPR001938 -
Cam08g1895 349 Gene3D Thaumatin 31 246 IPR037176 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1895 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1895 Cam-Chr8:24923322 Cam10g0070 Cam-Chr10:2270889 1.50E-100 dispersed
Cam04g1094 Cam-Chr4:25102477 Cam08g1895 Cam-Chr8:24923322 9.70E-24 transposed
Cam01g2081 Cam-Chr1:33867078 Cam08g1895 Cam-Chr8:24923322 1.10E-95 wgd
Cam05g1992 Cam-Chr5:28726514 Cam08g1895 Cam-Chr8:24923322 1.20E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1130 Blo01g01603 Blo12g01115 Bda01g00478 . . . . . Cmo05g00314 Cmo12g00355 Cma01g01018 . Car01g00899 Car12g00381 Sed11g1094 . Cpe07g00360 Bhi04g00141 Tan02g2081 Cmetu03g1137 . Hepe10g0160 . Lcy13g1907 Cla08g01417 Cam08g1895 Cec08g1473 Cco08g1606 Clacu08g1588 . Cre08g1372 Cone4ag1978 . Cone17ag1410 Cone20ag0072 . . Chy04g00409 Cme03g00439 . Blo18g00229 . Bda13g01547 . . . Bma02g00291 . Cmo01g01060 . Cma12g00404 Cma05g00312 Car05g00808 Car09g00086 Cpe11g00260 Cpe02g00066 . . . . . . . . . . . . . . Lsi08g00283 Csa02g02140 Chy03g01379 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000476 2 3 3 3 2 4 4 4 4 5 4 4 6 4 4 5 4 4 4 4 4 4 4 4 4 4 3 5 4 3 116