Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1910 ATGTCGAACGCCGTCGAAGATCTCATCCTCCGCCACCGCCACTCCGATTTTCGATTTCAACTCCTTCGTTCTCACTCTCACCATCGCGACATGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCAGCTCCAGCTCTTCCGCCTCTGTGTTTCCTTCAGTACCATCGGCCTTCTCCGCCGTCGGATCAGTCCAACGCTTGCGACGGCCGTCTCGCTCCCGACACACATTCTACAGTTGCTACGCTCGACTTGAAACGAGCATATGATATTGATGACTCCGAGGCTTTGGCTAGTAGACAAGTTGTAGCATCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCGAAGTCTAGAACTCAAAAATCAATAGATGAGCCTGTTGATGGTCCTAACCTATCTACTAACGGTCGGTACGATAGCTCGTTAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTATGATATTACAAATGTTCTTGAAGGAATAGGTCTGATAGAGAAAACCACGACGAACCACATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATGAAGTTGGTAAATTAAAGGATGAAGTTAAAAGTTTATATGCAGATGAACGCAGACTCGACGAACTTATAAGGATGAAGCAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAACCGCAGGAAGAACCTTTTTATAACAGAGGAAGATATCTTGCGAATTCCTTGCTTCAAGAATCAGACACTTATAGCGGTTAAAGCCCCACAAGCTAGCTGTATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGACTGATCATCAGAAGCACCACTGGGCCAATTGATTTGTACCTCTTGAGGGCTGCAAAACAAGGGCCGGAAGAAAATACTTCCAAGCAAGCGAAACTATCTTCAGTACAGCACAAGAATCCTAACATATATACCAACAATACTTGTTCTCCTTTCCAAGAATTTCATGGAATGCAAAGAATTTTACCTTTACATAATAATATAGACGATGATTACTGGTTCCAATCAAATTCTCAAGTGAGTATTACGCATTTATGGGGTGAGGAACATAACTTTTAA 1245 42.41 MSNAVEDLILRHRHSDFRFQLLRSHSHHRDMSSSSSSSSSSSSAPALPPLCFLQYHRPSPPSDQSNACDGRLAPDTHSTVATLDLKRAYDIDDSEALASRQVVASEQRMRSNDSSCEPVSSANEKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDEVGKLKDEVKSLYADERRLDELIRMKQELLRNLEENANRRKNLFITEEDILRIPCFKNQTLIAVKAPQASCIEVPDPDEEACFSERQCRLIIRSTTGPIDLYLLRAAKQGPEENTSKQAKLSSVQHKNPNIYTNNTCSPFQEFHGMQRILPLHNNIDDDYWFQSNSQVSITHLWGEEHNF 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25038891 25042859 + CaPI482276_08g019100.1 Cam08g1910 133961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1910 414 Gene3D - 230 340 - -
Cam08g1910 414 SUPERFAMILY E2F-DP heterodimerization region 235 338 IPR037241 -
Cam08g1910 414 Coils Coil 250 277 - -
Cam08g1910 414 Gene3D - 153 225 IPR036388 -
Cam08g1910 414 PANTHER TRANSCRIPTION FACTOR E2F 104 409 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cam08g1910 414 CDD E2F_DD 234 338 IPR032198 GO:0046983(InterPro)
Cam08g1910 414 MobiDBLite consensus disorder prediction 51 73 - -
Cam08g1910 414 MobiDBLite consensus disorder prediction 58 72 - -
Cam08g1910 414 MobiDBLite consensus disorder prediction 102 126 - -
Cam08g1910 414 Pfam E2F transcription factor CC-MB domain 239 338 IPR032198 GO:0046983(InterPro)
Cam08g1910 414 SUPERFAMILY Winged helix DNA-binding domain 158 221 IPR036390 -
Cam08g1910 414 FunFam E2F transcription factor 1 152 225 - -
Cam08g1910 414 Pfam E2F/DP family winged-helix DNA-binding domain 160 223 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cam08g1910 414 MobiDBLite consensus disorder prediction 102 157 - -
Cam08g1910 414 SMART E2F_TDP_2 158 223 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2314 Cam-Chr2:35674984 Cam08g1910 Cam-Chr8:25038891 2.80E-62 dispersed
Cam06g1815 Cam-Chr6:29218080 Cam08g1910 Cam-Chr8:25038891 7.30E-08 dispersed
Cam04g1063 Cam-Chr4:24745653 Cam08g1910 Cam-Chr8:25038891 2.00E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52460 PF16421 E2F_CC-MB 4.40E-26 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1910 K06620 - csv:101211469 700.279