Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam08g1910 | ATGTCGAACGCCGTCGAAGATCTCATCCTCCGCCACCGCCACTCCGATTTTCGATTTCAACTCCTTCGTTCTCACTCTCACCATCGCGACATGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCAGCTCCAGCTCTTCCGCCTCTGTGTTTCCTTCAGTACCATCGGCCTTCTCCGCCGTCGGATCAGTCCAACGCTTGCGACGGCCGTCTCGCTCCCGACACACATTCTACAGTTGCTACGCTCGACTTGAAACGAGCATATGATATTGATGACTCCGAGGCTTTGGCTAGTAGACAAGTTGTAGCATCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCGAAGTCTAGAACTCAAAAATCAATAGATGAGCCTGTTGATGGTCCTAACCTATCTACTAACGGTCGGTACGATAGCTCGTTAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTATGATATTACAAATGTTCTTGAAGGAATAGGTCTGATAGAGAAAACCACGACGAACCACATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATGAAGTTGGTAAATTAAAGGATGAAGTTAAAAGTTTATATGCAGATGAACGCAGACTCGACGAACTTATAAGGATGAAGCAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAACCGCAGGAAGAACCTTTTTATAACAGAGGAAGATATCTTGCGAATTCCTTGCTTCAAGAATCAGACACTTATAGCGGTTAAAGCCCCACAAGCTAGCTGTATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGACTGATCATCAGAAGCACCACTGGGCCAATTGATTTGTACCTCTTGAGGGCTGCAAAACAAGGGCCGGAAGAAAATACTTCCAAGCAAGCGAAACTATCTTCAGTACAGCACAAGAATCCTAACATATATACCAACAATACTTGTTCTCCTTTCCAAGAATTTCATGGAATGCAAAGAATTTTACCTTTACATAATAATATAGACGATGATTACTGGTTCCAATCAAATTCTCAAGTGAGTATTACGCATTTATGGGGTGAGGAACATAACTTTTAA | 1245 | 42.41 | MSNAVEDLILRHRHSDFRFQLLRSHSHHRDMSSSSSSSSSSSSAPALPPLCFLQYHRPSPPSDQSNACDGRLAPDTHSTVATLDLKRAYDIDDSEALASRQVVASEQRMRSNDSSCEPVSSANEKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDEVGKLKDEVKSLYADERRLDELIRMKQELLRNLEENANRRKNLFITEEDILRIPCFKNQTLIAVKAPQASCIEVPDPDEEACFSERQCRLIIRSTTGPIDLYLLRAAKQGPEENTSKQAKLSSVQHKNPNIYTNNTCSPFQEFHGMQRILPLHNNIDDDYWFQSNSQVSITHLWGEEHNF | 414 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 25038891 | 25042859 | + | CaPI482276_08g019100.1 | Cam08g1910 | 133961 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam08g1910 | 414 | Gene3D | - | 230 | 340 | - | - | |
Cam08g1910 | 414 | SUPERFAMILY | E2F-DP heterodimerization region | 235 | 338 | IPR037241 | - | |
Cam08g1910 | 414 | Coils | Coil | 250 | 277 | - | - | |
Cam08g1910 | 414 | Gene3D | - | 153 | 225 | IPR036388 | - | |
Cam08g1910 | 414 | PANTHER | TRANSCRIPTION FACTOR E2F | 104 | 409 | IPR015633 | GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER) | |
Cam08g1910 | 414 | CDD | E2F_DD | 234 | 338 | IPR032198 | GO:0046983(InterPro) | |
Cam08g1910 | 414 | MobiDBLite | consensus disorder prediction | 51 | 73 | - | - | |
Cam08g1910 | 414 | MobiDBLite | consensus disorder prediction | 58 | 72 | - | - | |
Cam08g1910 | 414 | MobiDBLite | consensus disorder prediction | 102 | 126 | - | - | |
Cam08g1910 | 414 | Pfam | E2F transcription factor CC-MB domain | 239 | 338 | IPR032198 | GO:0046983(InterPro) | |
Cam08g1910 | 414 | SUPERFAMILY | Winged helix DNA-binding domain | 158 | 221 | IPR036390 | - | |
Cam08g1910 | 414 | FunFam | E2F transcription factor 1 | 152 | 225 | - | - | |
Cam08g1910 | 414 | Pfam | E2F/DP family winged-helix DNA-binding domain | 160 | 223 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Cam08g1910 | 414 | MobiDBLite | consensus disorder prediction | 102 | 157 | - | - | |
Cam08g1910 | 414 | SMART | E2F_TDP_2 | 158 | 223 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam02g2314 | Cam-Chr2:35674984 | Cam08g1910 | Cam-Chr8:25038891 | 2.80E-62 | dispersed | |
Cam06g1815 | Cam-Chr6:29218080 | Cam08g1910 | Cam-Chr8:25038891 | 7.30E-08 | dispersed | |
Cam04g1063 | Cam-Chr4:24745653 | Cam08g1910 | Cam-Chr8:25038891 | 2.00E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52460 | PF16421 | E2F_CC-MB | 4.40E-26 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam08g1910 | K06620 | - | csv:101211469 | 700.279 |