Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1910 ATGTCGAACGCCGTCGAAGATCTCATCCTCCGCCACCGCCACTCCGATTTTCGATTTCAACTCCTTCGTTCTCACTCTCACCATCGCGACATGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCAGCTCCAGCTCTTCCGCCTCTGTGTTTCCTTCAGTACCATCGGCCTTCTCCGCCGTCGGATCAGTCCAACGCTTGCGACGGCCGTCTCGCTCCCGACACACATTCTACAGTTGCTACGCTCGACTTGAAACGAGCATATGATATTGATGACTCCGAGGCTTTGGCTAGTAGACAAGTTGTAGCATCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCGAAGTCTAGAACTCAAAAATCAATAGATGAGCCTGTTGATGGTCCTAACCTATCTACTAACGGTCGGTACGATAGCTCGTTAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTATGATATTACAAATGTTCTTGAAGGAATAGGTCTGATAGAGAAAACCACGACGAACCACATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATGAAGTTGGTAAATTAAAGGATGAAGTTAAAAGTTTATATGCAGATGAACGCAGACTCGACGAACTTATAAGGATGAAGCAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAACCGCAGGAAGAACCTTTTTATAACAGAGGAAGATATCTTGCGAATTCCTTGCTTCAAGAATCAGACACTTATAGCGGTTAAAGCCCCACAAGCTAGCTGTATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGACTGATCATCAGAAGCACCACTGGGCCAATTGATTTGTACCTCTTGAGGGCTGCAAAACAAGGGCCGGAAGAAAATACTTCCAAGCAAGCGAAACTATCTTCAGTACAGCACAAGAATCCTAACATATATACCAACAATACTTGTTCTCCTTTCCAAGAATTTCATGGAATGCAAAGAATTTTACCTTTACATAATAATATAGACGATGATTACTGGTTCCAATCAAATTCTCAAGTGAGTATTACGCATTTATGGGGTGAGGAACATAACTTTTAA 1245 42.41 MSNAVEDLILRHRHSDFRFQLLRSHSHHRDMSSSSSSSSSSSSAPALPPLCFLQYHRPSPPSDQSNACDGRLAPDTHSTVATLDLKRAYDIDDSEALASRQVVASEQRMRSNDSSCEPVSSANEKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDEVGKLKDEVKSLYADERRLDELIRMKQELLRNLEENANRRKNLFITEEDILRIPCFKNQTLIAVKAPQASCIEVPDPDEEACFSERQCRLIIRSTTGPIDLYLLRAAKQGPEENTSKQAKLSSVQHKNPNIYTNNTCSPFQEFHGMQRILPLHNNIDDDYWFQSNSQVSITHLWGEEHNF 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25038891 25042859 + CaPI482276_08g019100.1 Cam08g1910 133961

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1910 414 Gene3D - 230 340 - -
Cam08g1910 414 SUPERFAMILY E2F-DP heterodimerization region 235 338 IPR037241 -
Cam08g1910 414 Coils Coil 250 277 - -
Cam08g1910 414 Gene3D - 153 225 IPR036388 -
Cam08g1910 414 PANTHER TRANSCRIPTION FACTOR E2F 104 409 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cam08g1910 414 CDD E2F_DD 234 338 IPR032198 GO:0046983(InterPro)
Cam08g1910 414 MobiDBLite consensus disorder prediction 51 73 - -
Cam08g1910 414 MobiDBLite consensus disorder prediction 58 72 - -
Cam08g1910 414 MobiDBLite consensus disorder prediction 102 126 - -
Cam08g1910 414 Pfam E2F transcription factor CC-MB domain 239 338 IPR032198 GO:0046983(InterPro)
Cam08g1910 414 SUPERFAMILY Winged helix DNA-binding domain 158 221 IPR036390 -
Cam08g1910 414 FunFam E2F transcription factor 1 152 225 - -
Cam08g1910 414 Pfam E2F/DP family winged-helix DNA-binding domain 160 223 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cam08g1910 414 MobiDBLite consensus disorder prediction 102 157 - -
Cam08g1910 414 SMART E2F_TDP_2 158 223 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1910 K06620 - - csv:101211469 700.279
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2314 Cam-Chr2:35674984 Cam08g1910 Cam-Chr8:25038891 2.80E-62 dispersed
Cam06g1815 Cam-Chr6:29218080 Cam08g1910 Cam-Chr8:25038891 7.30E-08 dispersed
Cam04g1063 Cam-Chr4:24745653 Cam08g1910 Cam-Chr8:25038891 2.00E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1096 . . . . . . . . Cmo05g00304 Cmo12g00363 . . . Car12g00390 Sed03g1691 . Cpe07g00370 Bhi04g00158 Tan02g2064 Cmetu03g0122 . Hepe10g0142 . Lcy13g1920 Cla08g01431 Cam08g1910 Cec08g1486 . Clacu08g1601 . Cre08g1386 . . . . . . . Cme03g01889 . . . . . . . . . . . Cma12g00412 Cma05g00301 Car05g00249 . Cpe11g00250 . . . . . . . . . . . . . . . Lsi08g01330 Csa02g02126 Chy03g01393 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam01g1461 . 580 934 E2F-DP Transcription Factor Family AT3G48160 56.6 9.2e-102 367.5
Cam10g0887 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 6.3e-60 228.0
Cam02g2314 . 21 441 E2F-DP Transcription Factor Family AT2G36010 55.1 4.0e-120 428.7
Cam04g1063 . 11 451 E2F-DP Transcription Factor Family AT2G36010 55.2 5.3e-120 428.3
Cam02g2314 . 10 446 E2F-DP Transcription Factor Family AT5G22220 57.4 2.9e-115 412.5
Cam04g1063 . 11 458 E2F-DP Transcription Factor Family AT5G22220 50.3 9.3e-98 354.4
Cam08g1910 . 154 408 E2F-DP Transcription Factor Family AT1G47870 54.1 6.1e-66 248.4
Cam02g2314 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 6.3e-63 238.4
Cam10g0887 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 6.3e-60 228.0
Cam02g2314 . 10 446 E2F-DP Transcription Factor Family AT5G22220 57.4 2.9e-115 412.5
Cam04g1063 . 11 458 E2F-DP Transcription Factor Family AT5G22220 50.3 9.3e-98 354.4
Cam02g2314 . 21 441 E2F-DP Transcription Factor Family AT2G36010 55.1 4.0e-120 428.7
Cam04g1063 . 11 451 E2F-DP Transcription Factor Family AT2G36010 55.2 5.3e-120 428.3
Cam08g1910 . 154 408 E2F-DP Transcription Factor Family AT1G47870 54.1 6.1e-66 248.4
Cam02g2314 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 6.3e-63 238.4
Cam01g1461 . 580 934 E2F-DP Transcription Factor Family AT3G48160 56.6 9.2e-102 367.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012017 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52460 PF16421 E2F_CC-MB 4.40E-26 No_clan Cam TF