Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1916 ATGGGAAGGTCTCGCTCATGCTTCCAAGTAATCACATGTGGTAGCGATTCAAAGGACGAAGATGAGATCGATGTACTTGAGAGTAAGGCGTCTAAAGACAAACGAGGCTGGAGTTTCCGTAAAAGATCTTCCCAGCATCGTGTGCTAAACAACACTGTGACCGCAGAAACTCCTCCTGTAGAGAAGGAGAACCTTGAAACTGCTACATTCGACTTCCAATCATCAGCCAACTCCACTGTTCCTGAGAAACCCACTATAATACACCTCACCAATGAGGAAACCCATGTGCCTAACATCGAGAATCCTAAAGGATCTGATAAGGTGGATGTTGCATCCGAAAATGAAAGTAAGGTCGATAGTGAGATTCAGGAGTCTACTGTTGTTGTCATCCAGGCTGGTGTCAGGGGGCTCTTGGCACAGAAGGAGCTGATTAAACTTAAGAATGTAGTAAAGGTGCAAGCTGCTGTTCGTGGATTCTTGGTAAGGCGACATGCTGTGGGAACACTCCGTTGTGCTCAAGCCATTGTCAAAATGCAAGCTATTGTACGTGCTCGTCGTGCTCATCTCTCCCCTGAGGGATCGTCCCCAGACGAGCTGCACAACAATAATGAGAAGGAAAATCCTGGTTCGAAGATCTTGGTGAAGGGAGAGATGACAAAATCCAACTTGAGATATATTTCAATTGAAAAGCTACTTAGCAATAGTTTTGCCCGGCAGTTGTTGGAATCAACACCAAGGAACAAACCAATCAAAATCAAGTGCGTTCCTTCCAAAAATGATTCTGCTTGGAAATGGTTGGAGCGCTGGATGGCCGTTTCATCATTGGATGTCTTGGAGCCGAAGAAAGAAGAATTAGTCCCTGGTCAAATGGAAGAAGAAACTGAGGAGCCGAAGGAAGAAGAATCAGAAGAATCAGACACTGAGCAATTGAAAAGAGAAATTGAGGAATCTCATCTTGAAGATCAAATTGACTCAAAACCGTTGTCTGAAACAGAAAATTTGAACTCCAGCACCATCAAATCAGTTTCCCCATCTGAAAGTGAAGATTTAATTACTTATGATGCCAGTAACTTACAATCTCAGACCTCCAGCTCTCCATCTTCATTAGTGAAGGATAATTTGGAGCAGGCTTTGCCTGAGACTGCTAGAATGCCTGAAGCCGGAGAGAAATCAACTAAGGTTAGTTCTGTACAACATCAGAAAATACAGATGGATGGTGTAGGTTTGCAAACAGAGTCAAACACCTCCTCTGATAAACCTCAGATGGACGTGGAGCAAGTCAATCCTCTGAAAAGATTAGCCCCCGAACAACTGGAGAATGAGGGTAAGAAATTTGTGCTTGGATCAAGAAAGGTGAACAATCCCTCATTTATCAATGCCCAGGCAAAATTTGAACAGTTGAGTTTGGCACCAGATTCAATTGGAACAATTAGTTCAATGCATCAAGATGATGGAGTCGAATCTCATTCAGAAACAGTATCATCTACAGCGGATACTGTACCCAGGACGAAGGAGTCAAGTGCAGAGGAAAATGTTGTTCTTCCTGCATCTAGGATAACTCAAGTTGGTGGCTCTGAATGTGGCACCGAGCTCTCTATTTCTTCCACCCTTGATTCACCTGATATATCTGAAGCAGGAGTGGCAGATCCACATGCAAATGATGTTTCAAAGAAAGGAGTCCAAGATCCTAGCAGTGACCTAAGCGTAGAAGCTGAAATCAAGGCTTCTACTACTCCAATGCAAAATGACATTCAACTTCCTGTGGATCAACCAGAAGAAGCTGGTGAATCTAACGGTCATTCCATCACTTCAGTAGCTGTTGTAGACTCTGCCCCAAGTGAATCAAAGCTAGAGAGGAGTTCATCAGATCAACAGAGAGAACAGGAGGCTGATACGGGTGATCATCCAACATATAAATCATCTCCAGAAGCTTCTCCAAGAAGTCATTTAACTGTTCCAGAATCCCAAGGAACACCTTCTAGTCAGGTATCAATAAAGGCTAAACGGGATAAATCTGATAAAACAGTCTCTTTCCTTAAGCAAAAGTCTTCATCAGCAGGAAAGAAATCACCATCCAGTTTAAATCGCAATTCTGGCTCGAGGAGTAGTACAGATAATTCTTACAAAGATCAGAAGTCTGGGAAGAGAAGAAATTCATTTGAAGCACGACAGGAAAATGTTGAAAAGGAATTAAGAGAGAGCAGTAGTAGTAGCTCTCTTCCTCATTTCATGCAAGCCACAGAATCCGCTAGAGCCAAGGCCCATTCGACCAACTCACCAAGATCAAGTCCGGATGTTCAAGATGGAGAAATATACATGAAGAAAAGGCATTCCTTACCTGCTGATGGCCGGCAAGAATCTCCACGCATTCAGCAGCAAACAACTCGAACCCAGCAGGGAGCGAAGGGAAATGAGAAAAAGTGGCGAAGGTAA 2433 43.49 MGRSRSCFQVITCGSDSKDEDEIDVLESKASKDKRGWSFRKRSSQHRVLNNTVTAETPPVEKENLETATFDFQSSANSTVPEKPTIIHLTNEETHVPNIENPKGSDKVDVASENESKVDSEIQESTVVVIQAGVRGLLAQKELIKLKNVVKVQAAVRGFLVRRHAVGTLRCAQAIVKMQAIVRARRAHLSPEGSSPDELHNNNEKENPGSKILVKGEMTKSNLRYISIEKLLSNSFARQLLESTPRNKPIKIKCVPSKNDSAWKWLERWMAVSSLDVLEPKKEELVPGQMEEETEEPKEEESEESDTEQLKREIEESHLEDQIDSKPLSETENLNSSTIKSVSPSESEDLITYDASNLQSQTSSSPSSLVKDNLEQALPETARMPEAGEKSTKVSSVQHQKIQMDGVGLQTESNTSSDKPQMDVEQVNPLKRLAPEQLENEGKKFVLGSRKVNNPSFINAQAKFEQLSLAPDSIGTISSMHQDDGVESHSETVSSTADTVPRTKESSAEENVVLPASRITQVGGSECGTELSISSTLDSPDISEAGVADPHANDVSKKGVQDPSSDLSVEAEIKASTTPMQNDIQLPVDQPEEAGESNGHSITSVAVVDSAPSESKLERSSSDQQREQEADTGDHPTYKSSPEASPRSHLTVPESQGTPSSQVSIKAKRDKSDKTVSFLKQKSSSAGKKSPSSLNRNSGSRSSTDNSYKDQKSGKRRNSFEARQENVEKELRESSSSSSLPHFMQATESARAKAHSTNSPRSSPDVQDGEIYMKKRHSLPADGRQESPRIQQQTTRTQQGAKGNEKKWRR 810
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25111780 25115529 - CaPI482276_08g019160.1 Cam08g1916 133967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1916 810 Gene3D - 123 170 - -
Cam08g1916 810 MobiDBLite consensus disorder prediction 475 502 - -
Cam08g1916 810 MobiDBLite consensus disorder prediction 522 541 - -
Cam08g1916 810 MobiDBLite consensus disorder prediction 391 423 - -
Cam08g1916 810 MobiDBLite consensus disorder prediction 619 636 - -
Cam08g1916 810 MobiDBLite consensus disorder prediction 304 327 - -
Cam08g1916 810 MobiDBLite consensus disorder prediction 733 765 - -
Cam08g1916 810 MobiDBLite consensus disorder prediction 708 732 - -
Cam08g1916 810 MobiDBLite consensus disorder prediction 190 205 - -
Cam08g1916 810 MobiDBLite consensus disorder prediction 328 374 - -
Cam08g1916 810 MobiDBLite consensus disorder prediction 768 783 - -
Cam08g1916 810 ProSiteProfiles IQ motif profile. 123 151 - -
Cam08g1916 810 SMART iq_5 122 144 IPR000048 GO:0005515(InterPro)
Cam08g1916 810 SMART iq_5 145 166 IPR000048 GO:0005515(InterPro)
Cam08g1916 810 MobiDBLite consensus disorder prediction 596 618 - -
Cam08g1916 810 MobiDBLite consensus disorder prediction 189 210 - -
Cam08g1916 810 Pfam IQ calmodulin-binding motif 147 164 IPR000048 GO:0005515(InterPro)
Cam08g1916 810 MobiDBLite consensus disorder prediction 282 426 - -
Cam08g1916 810 MobiDBLite consensus disorder prediction 570 585 - -
Cam08g1916 810 MobiDBLite consensus disorder prediction 785 801 - -
Cam08g1916 810 ProSiteProfiles IQ motif profile. 145 174 - -
Cam08g1916 810 MobiDBLite consensus disorder prediction 678 707 - -
Cam08g1916 810 PANTHER IQ-DOMAIN 5-RELATED 17 776 - -
Cam08g1916 810 MobiDBLite consensus disorder prediction 475 810 - -
Cam08g1916 810 MobiDBLite consensus disorder prediction 638 665 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1916 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2028 Cam-Chr5:28988240 Cam08g1916 Cam-Chr8:25111780 6.30E-153 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1073 . . . . . . . . . Cmo12g00367 . . . Car12g00394 . . Cpe07g00374 Bhi04g00242 . . . Hepe10g0137 . . Cla08g01436 Cam08g1916 Cec08g1492 . Clacu08g1606 . Cre08g1392 . . Cone17ag1391 . . . . . Blo17g00748 . . . . . . Bma05g00161 . . . Cma12g00416 Cma05g00295 Car05g00244 . Cpe11g00245 . . . . . . . . . . . . . . . Lsi08g01336 Csa02g02120 Chy03g01397 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002353 2 2 0 1 2 2 3 2 2 2 1 2 3 2 2 2 2 4 3 2 2 2 2 2 2 2 1 4 3 1 62