Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1917 ATGGAAGGGAAGAAGGGGAATAAGGGTTACGTGTGGGCAATTTCAGCCGGTTTCAACGCTGCTTTTGCCGCCATTGCCGCCAAGCTTTTCTCCTATACGTTAATTAGGTATGGACTGGTAATTGCGTTCAACTTGGCAATGTGGGGATGTTATGTCAATAGCTTAAAAGCTCTCTCCTCATTACAAGCTACAGGGACAAACTTTTCAGCTAACTTTCTTTGTTCTGGTCTAGCCGGTTTCTTCTTGTTTGAAGAAGCATTATCATTTCAGTCTAACGCGCTGTCATTCATTACCATTTTGTTAAAGTTGATCAGTAGTTGGATCAGTTATTTGCCTATCAATGTAGAAGCCAGCAATCGCAATGATGAATACTTACTGACAAGTAGTACTTTGGAATCGTTCGCTTCATTTCAGTTTGATATTTTGCCGCTCGCTAAAAGTTGTAGCTGTTATAGTTTCAAGAATTCAACGCATTCAAACTTGCATCTCTTAACACCAATGTACTATTTTCCAGTGGGCAGGCCCATCAACGGTGGACATTGTTCTCGACGTGCAGATTTTCAATCCTTTTCTCCATCATCTTCTCTTTTCTCTTTTGTTTTCTCCACTTTTCTTCCTCTCTCCTTCTCACCGGGTTTCGTCTGCTTCTGGTTGTTATTCTTCTTTTTAGTTCCGGAATTTGTTGTGGATGATCTGATGGAGGACGAGATGGGGAAGATGGGTCAGCCATTCGAGCTGACTGGAGTGGAGCTTTTTTATTACTGTCTGTCTTGGTTATTAGTTTTGGAGTCACAAATGGATGACAGTGGACACCGTGAGAATGGACGGCACAAAGCAGATCAGTATAAGTCGGCTCAAGGTGGTCCGTGGATGATGCAGCATCAACCATCAATGAAGCAGATAATGACAATTATGGCTGAAAGAGATGCGGCCCTTCAAGAGAGGAATTTGGCCCTTTCCGAGAAGAAGGCTGCACTAGCGGAGCGAGACATGGCTTATCTACAGCGAGACGCTGCGATTGCAGAGAGAAACAATGCACTTTTGGAACGGGACAATGCCATTGCTACACTTCAGTATCGTGAAAACTCCCTAACAAATAACATGTCATGTCCACCAGGATGCCAAATTGCTAGAGGAGTGAAGCATATCCATCATCCACAGCAGCAACAACACACGCATGTGCCCCACATGAATGAGAGTAATTATAATTCCAGAGAAATGCATCCTTCAAACGATGCTTGCCCGGTATCCCCTGTTGCTTCTGAATCAACAAAGGCACGGCAAAGCAAGCGTCCAAAGGAGGGAAAGACAGTTACAACACCAAACAAGAAGGTTTCAAAAGGTCCAAGGAAGGTCAAAAGAGAGGCTGAAGACTTGAATAAGGTAATGCTGGGCAAGTCACAAGAATGGAAGGATGGAATTGGGATCATGAGTGGAGGTGATGATCTTAATAAACAGTTAGTAGTATCAAAGTCGGATTGGAAGGGACAGGATTTAGGATTGAACCAGGTTGCCTTTGATGAATCAACCATGCCAGCTCCAATATGCTCCTGCACAGGAGTTATCAGACAATGCTACAAATGGGGAAATGGTGGATGGCAATCTGCATGTTGTACTACCACCATCTCAATGTATCCATTACCCGCTGTTCCCAACAAACGACACGCCCGACTTGGTGGTCGGAAAATGAGCGGAAGTGCTTTCAACAAGCTGCTTAGCCGCCTTGCAGCTGAAGGTCACGATCTGTCAGCTCCAGTTGATCTTAAAAATCACTGGGCAAAGCATGGAACAAATCGTTACATCACCATCAAGTAG 1815 44.24 MEGKKGNKGYVWAISAGFNAAFAAIAAKLFSYTLIRYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQSNALSFITILLKLISSWISYLPINVEASNRNDEYLLTSSTLESFASFQFDILPLAKSCSCYSFKNSTHSNLHLLTPMYYFPVGRPINGGHCSRRADFQSFSPSSSLFSFVFSTFLPLSFSPGFVCFWLLFFFLVPEFVVDDLMEDEMGKMGQPFELTGVELFYYCLSWLLVLESQMDDSGHRENGRHKADQYKSAQGGPWMMQHQPSMKQIMTIMAERDAALQERNLALSEKKAALAERDMAYLQRDAAIAERNNALLERDNAIATLQYRENSLTNNMSCPPGCQIARGVKHIHHPQQQQHTHVPHMNESNYNSREMHPSNDACPVSPVASESTKARQSKRPKEGKTVTTPNKKVSKGPRKVKREAEDLNKVMLGKSQEWKDGIGIMSGGDDLNKQLVVSKSDWKGQDLGLNQVAFDESTMPAPICSCTGVIRQCYKWGNGGWQSACCTTTISMYPLPAVPNKRHARLGGRKMSGSAFNKLLSRLAAEGHDLSAPVDLKNHWAKHGTNRYITIK 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25126617 25134507 - CaPI482276_08g019170.1 Cam08g1917 133968

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1917 604 SMART GAGA_bind_2 266 604 IPR010409 -
Cam08g1917 604 Pfam GAGA binding protein-like family 266 604 IPR010409 -
Cam08g1917 604 Coils Coil 324 351 - -
Cam08g1917 604 PANTHER - 288 604 IPR010409 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009723(PANTHER)|GO:0043565(PANTHER)
Cam08g1917 604 MobiDBLite consensus disorder prediction 390 425 - -
Cam08g1917 604 MobiDBLite consensus disorder prediction 383 453 - -
Cam08g1917 604 MobiDBLite consensus disorder prediction 426 440 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1917 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0694 Cam-Chr1:7762291 Cam08g1917 Cam-Chr8:25126617 9.70E-36 transposed
Cam02g0483 Cam-Chr2:5496013 Cam08g1917 Cam-Chr8:25126617 2.80E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1061 . . . . . . . . . . . . . . . . . Bhi04g00240 . . . Hepe10g0135 . . Cla08g01437 Cam08g1917 Cec08g1493 . . . Cre08g1393 Cone4ag1956 Cone7ag1869 . . . . . Cme03g01896 . Blo18g00782 . . . . Bma01g00731 . . . . Cma12g00420 . . Car15g00648 . . . . . . . . . . . . . . . . Lsi08g01338 . Chy03g01399 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam01g0694 . 339 618 BBR/BPC Transcription factor family AT2G01930 57.4 5.0e-86 314.7
Cam08g1917 . 490 604 BBR/BPC Transcription factor family AT2G35550 60.0 1.4e-38 156.8
Cam02g0483 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 2.6e-37 152.5
Cam01g0694 . 339 618 BBR/BPC Transcription factor family AT1G68120 50.5 3.9e-72 268.5
Cam08g1917 . 498 604 BBR/BPC Transcription factor family AT1G68120 57.0 3.1e-37 152.5
Cam02g0483 . 1 313 BBR/BPC Transcription factor family AT2G21240 63.2 6.4e-84 307.8
Cam08g1917 . 266 604 BBR/BPC Transcription factor family AT2G21240 50.9 9.3e-59 224.2
Cam02g0483 . 1 313 BBR/BPC Transcription factor family AT4G38910 59.7 1.7e-70 263.1
Cam08g1917 . 266 604 BBR/BPC Transcription factor family AT4G38910 50.3 2.4e-56 216.1
Cam08g1917 . 354 604 BBR/BPC Transcription factor family AT5G42520 59.4 1.7e-81 299.7
Cam08g1917 . 490 604 BBR/BPC Transcription factor family AT2G35550 60.0 1.4e-38 156.8
Cam02g0483 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 2.6e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004398 3 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52462 PF06217 GAGA_bind 1.70E-105 No_clan Cam TF