Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1920 ATGATTGGCGGTGGGTTAAACTTTAAAGAGGGCATTTACTTGGAAGAGACTTTTTCCCCCATCCCGCTGGCGGCGCACTTCTCAGAGCCGACCGTCACTCTCATCACCGGTGAGGCTAACGTGCGCACCTCACTCTCTTCTTCTTCCTTTCACCAATTCTTGAATGCCGCCATAGACGAGCTTCTTCAAGTTAGGAAGGAACTGTTTCTGATATTCGCGGGTATTTTTGGATTAGCTTCGAATTTTGTGGAGCACGGCCGAGAATGGTTGTGGAGTTACATTCCGCACGGGGGTTACACCATCCAGATTTGCTGGCTATTTATTGAATGTAGGGTTGGGAAGATGGATGGAGACAATAAGAAGTCTGGTTTTAGGAAAAGAACGAAGCCAAAGGATGGTGGGTTTGACTCTGATGATGATGAGCCCATTGGCTCTCTGCTGAAATTGAAGAGATCACGAAACTCTAAAAAGACTAAGTTGGGTGTAGATGATGGCGGTGAAAGGGACAACATAGTTGACAAGAAAGGAGCAAAATTGCCAGTGCTAGAGGACTTTGGGGGAATGGATGATACTTTAGCTAGTTTCAGAAAGAAGTTGAGGCGTCCTAAAAAGGTTAGTGGACCCGAAATTGCTAGGGAACAGAGTTCTGCTCTAAGTGTGACAGAATCTTTAGATCCATTATCTAATACGTCCAGAGGACAAGGGGATTTAGACACAAGATTGAGACCAGAAAATTGTGAATTAATGGATCGTGAAGAGTCTGATCCATCTGCAAAGATTGACATAGAAACAAGGTGTGAAGCACCTGATTTGGAATTAAAAGACATGGAGATGGGTATCCTGAGTAGGAGAAGTGCTAATTGCTCTTTCGATAAACAGTTGGATGATTCATTGTCTGCATTTGTCCAAAAGGTTCAGTCTGGTTCAACTAGGAAATCCTTGGTATCTACAACATTTAAACCAGACTGCAAGGATGAGGCTTCCGAAAATAAATTGAGTCCTTTTTCTAGAGCTGTTTCTGGGGATCATGAAACACACTCCATTGTGAGTTTTAATTCTTCGGCTAAGCTGGCACAAGTTGTCAAAAAAACAGATTCTGAACTTAATACATCGTATTTAATTTCCTGTTCACATTACACCAAAGAGAATTGTAATCCTGGTCGGGGACAATGCCATCTAGGGGTTGAATGTGACCAAGAAGAGTATCAATGCCCTCTTAATAATCACAAGAATCCTGACATGAGACCATGCATATCAAATGAAGTTGATGATGAAGACAGCAAAAGCTTTACTCAATTGAGGGGCAATTTCCGGGCACTGGAAAGAAAGGCATCCTGTGAAATCAAGAATGTACTAAAACATTGTTCTTGTGGCAATACAATGGTGGATAGCCATTTGGCAGTAATGGGTTCTTTTCAGGATGGGCTAGGTGAAAATCAACTTAATGAAAGTATGTGCAGTTCTTGTCGTCCTCTAGAACAGGTAAATGAAAACCATGGCCTTTGTGGGGGTGTTTCCAGCAGAGATTTTTGTGATGTGGTGGCCCAAGAGACCACAGTCACTTTGTCTAAAATAACCCCAGGTGTAGATTGCGAAGGAAAAGAAAGATCACTTGTTATACATCACGATGAATTGCTGAACTCTACCAATTTCTGTGAAAGTTCTTCCAAAGAAATTCGTAGATCTACTAAAGATTTGAAGGTTTCTGATCAATCATTAGGCAGAACAACACTCTCCAATCTTCAGTTATCTGCAGGTTTCGATTCATCGAAAGTGGATAAAACTTGCAGCGACTCTGATAATTTAAATACTGGAACTGATGAGCCGAATAATGAAGGTGGTTCTGTGCAAAAGGAAAATGCTCTGATCTCTAGGATTTCAGATTCAACTGCTGTTCAATCTCATAGATCCGAAAAATCTGGGGCAACTGCTTCTGGACCAAATTATCCAGAGGTTTGTCCTAGTGGAAATTTCAGCATGATATCAGATAGTCAACCGGCCAAGGCTTCAGTGGAGATAGATGGTCCAAATAATATACTTACTGGTAAAGAGGTTAAGGTATCTTCTCTTGGGTCTTTCACTCCAGATGATAATGACCTTGAGGATGTAATATCTGCTCCTGGTAGTGAAAAAGATTTAAAGCTTTCAGCTTTACGTGTAGCACGCAAGACAAAGAAGCCTAGACATGATGACATGGCTTATGAAGGAGATATTGATTGGGAGGTTTTGATTAGTGAGCGTGCAGTTGATGGTGACCATTCTTTCAGATCAAGAAAGGATTCTACATCAACGACTTTTACAGAGGCTGAAACTGGTGGTAGAGCTGCAGTGTCTGCAGGGCTTAAGGCACATGCAGTTGGTCTACTTGAGAAGATTAAATTTAAGGATGTGCTAAAGCGCAAAGGTGGGCTTCAAGAGTACATAGCATGCAGGAATCAGATCCTGGGCCTTTGGTGTAAAGATGTTACACGCATTTTGCATCTCGTTGACTGTGGGGTCACTGATACTCCCTCTATGGATGAACCACCACGTTTTCCCCTTATTAGGGAGATCTATGCATTTCTTAATCTACGTGGTTATATAAATGCGGGGATTGCTTCTGAGAAAGCCAAATCAGAATCTGACATTAAATATGATCATGAACTGGGAGAGAAGAAGGTTGGAGACGTTAGTGTTGCTTCAGCTGCTGGTTCTGAAGAAGGGGTTTCTGTCATGGTAAAAAATTCTGATGCTTCTAATGCAGAGAACGATGTTTCAGCTGGCTGTGAAGTAATATTGGAAGATGCTGAAGGAAGAGACCCCGTGATTGTAAATAATTTGGATTTACCAAAATCAGTGGAACATGAACAAGAATTGGTACATGACTTGGAGTATGGTACTCCTGATTCTATACCGGTAAAATTGGTTGGTGATGTTCCAGGTAAAGCTCCCTCGCATTTAACTAATCATTCAAGAAATGGTTGGCACCCAATCCACTCCTCTGATGAGTGTGTAGGAGGTGATCAACAACAGCAGAGTAATTCTGATGTCAGAAAGAAAGTAATTGTTATTGGAGCTGGTCCTGCTGGCTTAACTGCTGCAAAGCACTTGCATCGTCAGGGCTTTGCTGTCACCATACTTGAAGCCAGGAACAGGTTAGGAGGTCGTGTTCATACAGATCGCTCCTCTCTTTCTGTTCCTGTAGATCTTGGTGCAAGTATTATTACAGGAGTAGAGGCTGATGTCGCAAGCGAAAGAAGACCCGATCCTTCCTCATTGATTTGCACTCAATTGGGCCTTGAGTTGACTGTATTAAATAGTGACTGTCCCCTCTATGACATCATTACATGCAAAAAAGTTCCAGTAGACATGGACGAGGCTTTGGAAGCAGAATATAATAGTCTTCTTGATGACATGGTGTTGCTTGTTGCACAAAAAGGGGAGCATGCAATGGCCATGTCCCTCGAGGAGGGTTTAGAATATGCCCTTAAGCGACGACGCATGGCTCGAGGTATGGATGTTTGTTCTGAGGAAGAGGTTTTGAGTCCCTTTGAGAGGAGAGTTATGAATTGGCATTTTGCTAACTTGGAGTATGGTTGTGCTGCTATGCTCAAGAAAGTATCTCTTCCTAATTGGAATCAGGATGATCTTTATGGAGGTTTTGGAGGAGCTCATTGTATGATTAAAGGGGGTTATAGCACTGTTGTTGAGTCTCTTGGTGGAGGACTCGATGTTCACCTAAATCATGTTGTGGCTGATATTTCTTACAGCACCGATGACACTGGGTTTAATGGGAATCAGTGTGCAAAGGTAAAAGTTTCCACAACCAATGGTTGCATGTTTCTAGGAGATGCTGTCCTTATTACTGTGCCTCTTGGGTGCTTGAAAGCAGAAACTATTAAATTTTCTCCACCATTGCCTGAATGGAAGCGTCTGTCCATCCAGCGCCTTGGGTTTGGAGTTCTTAACAAAATAGTTCTTGAATTTCCAGAAGTTTTCTGGGATGACTCTGTGGATTATTTTGGGGCAACTGCAGAGGAAACAAAGTGGAGGGGGCAGTGTTTCATGTTTTGGAATGTAAGAAAAACAGTTGGTGCTCCAGTTCTCATAGCACTAGTGGTTGGTCAGGCTGCTGTGGAGAGGCAATTTATGAGCTCTTCCGATAATGTAAGCCATGCATTAATGGTCCTTCGGAAACTTTTTGGAGAAGCTATGGTACCTGATCCAGTTGCATCTGTTGTAACTGATTGGGGAAGAGATCCGTTTAGCTATGGTGCTTACTCATATGTTGCTGTTGGAGCGTCTGGAGAGGACTATGACATTTTAGCAAGACCTGTTGGAAACTGTTTGTTTTTTGCTGGTGAAGCTACTTGCAAGGAGCATCCTGACACTGTTGGGGGTGCAATGATGAGTGGGCTAAGAGAGGCTGTACGCATGATTGATGTACTGAGTGATGGTTATGATTTCACAGCAGAAGTAGAGGCAATGGAAGCTGCTCAAAGGCAGTCTGAGTGTGAGAATGATGAAGTTGGGGACATAATTACAAGACTCGATGCTGTTAAGCTCTCTGATGCTCTTTACAAAAATTCTTTGGATGGTGCGATTTTGACCACAGAAGCTTTACTACAAGATTTGTTTTTTAGTGCAAAAACCACAGCAGGGAGATTGCAAGTGGCAAAAGAATTGCTGAATCTCCCTGCTGAGACGTTGAAGTCCTTTGCAGGGACCAAAGAAGGTCTTACAGTTCTCAACTCATGGATTTTGGACTCGATGGGGAAGGATGGGACTCAACTTCTTCGGCAATGTGTTCGTATTCTTGTGTTGGTTTCAACAGATCTACTTGCAGTTCGCTTATCAGGCATAGGTAAAACTGTCAAAGAAAAGGTATGTGTGCATACAAGCCGTGACATCCGTGCTATTGCAAGTCAGTTGGTTAGCATTTGGCTTGAAGTTTTCCGTAAAGAAAAGGCTGCTAATGGGGGTTTAAAACTCTCTAAGTCAGTTTCTGCTGTAGAACTATTGAAGAGGAAATCTAATAAAGATTCTTCTTCTGGGAAACCTCCTTTGCATGCATACAACAGCACACTGGATAGTAGGGGCAATTTGCCGACTTCTGCATCAGCTGCAATTCCCTTGCAGTCTGATGTCAATATGAAAAATGATAATAGCAAACAATTAAAATTAGAAATGGAAAATTCATCAAAATCAGATATCAGTTCATCGAGGTCAAGGGGCTCATTCGGAAAGCAGGATGCAGAGATGGAAGACAACAACATTGCTATGACAGAAGAAGAGCAGGCTGCCTTTGCTGCTGCTGAGGCAGCACGTGCAGCTGCACTTGCAGCTGCGAAGGCATATGCATCTTCTGAAGCCAAGAGTGCGATGCAGCTCCCAAAAATCCCCTCCTTTCACAAATTTGCTAGACGGGAGCATTATGCTCAAATGGATGAGTGTGAGTATAAGAAGAAGTTGTCTGGCAGTGTGCTTGGAAGACAAGATTGTATATCTGAAATAGATTCAAGAAACTGCAGGGTCAGGAACTGGTCTGTGGAATTTTCTGCTGCTTGTGTTAATCTTGAAAGTTCACGAATGTCTGCAGATAACCTTTCACAAAGAAGCCATTCGAATGAGATTGTTAGCCAATTAAACTTCAGGGAGCACTCTGGTGAAAGTGCTCCTGTGGATAGTAGTATATACACAAAAGCATGGGTTGATACAGCTGGTAGTGTTGGAATGAAAGATTATCATGCTATTGAGAGATGGCGCACTCAAGCAGCTGCAGCTCATGTAAATGATGAGGAGGATTCAAACACAAATTGGCATAAACCCACATGGAATAGTGATCAAGTAGCGAATGAGAGCTCAATATCACAAGTGACGATCAACAAGGAGCCCATAAGAAACAATCATCGTGGGGCTGACAGAATTAAGCAGGCTGTTGTTGATTATGTTGCTTCACTCTTGATGCCCCTTTACAAAGCAAGGAAAATCGACAAGGATGGATACAAGTCAATTATGAAGAAAAGTGCAACCAAGGTCATGGAACAGGCTACTGATGCAGAGAAAGGCATGACTGTTTCTGAGTTTCTTGATTTCAAACGTAGGAACAAGCTAGATGAGCCTACTGCTTGTGCGACTTGGAACACAACAAATGCAATATATGTACCGAGGCATCTTCGTATTCTAGTTCTAATTGTTGATGCAACAGCCTTGTTGCGAAGTTGTTTCCTAGAAGGTTCCATTAGTTACTCTTCATTATTCTCCATTGAATTCAATAGCTCATCTGATGGAAAAGTTCTTGTGGGTGCTGCACCCCATGTAAAATGA 6306 42.44 MIGGGLNFKEGIYLEETFSPIPLAAHFSEPTVTLITGEANVRTSLSSSSFHQFLNAAIDELLQVRKELFLIFAGIFGLASNFVEHGREWLWSYIPHGGYTIQICWLFIECRVGKMDGDNKKSGFRKRTKPKDGGFDSDDDEPIGSLLKLKRSRNSKKTKLGVDDGGERDNIVDKKGAKLPVLEDFGGMDDTLASFRKKLRRPKKVSGPEIAREQSSALSVTESLDPLSNTSRGQGDLDTRLRPENCELMDREESDPSAKIDIETRCEAPDLELKDMEMGILSRRSANCSFDKQLDDSLSAFVQKVQSGSTRKSLVSTTFKPDCKDEASENKLSPFSRAVSGDHETHSIVSFNSSAKLAQVVKKTDSELNTSYLISCSHYTKENCNPGRGQCHLGVECDQEEYQCPLNNHKNPDMRPCISNEVDDEDSKSFTQLRGNFRALERKASCEIKNVLKHCSCGNTMVDSHLAVMGSFQDGLGENQLNESMCSSCRPLEQVNENHGLCGGVSSRDFCDVVAQETTVTLSKITPGVDCEGKERSLVIHHDELLNSTNFCESSSKEIRRSTKDLKVSDQSLGRTTLSNLQLSAGFDSSKVDKTCSDSDNLNTGTDEPNNEGGSVQKENALISRISDSTAVQSHRSEKSGATASGPNYPEVCPSGNFSMISDSQPAKASVEIDGPNNILTGKEVKVSSLGSFTPDDNDLEDVISAPGSEKDLKLSALRVARKTKKPRHDDMAYEGDIDWEVLISERAVDGDHSFRSRKDSTSTTFTEAETGGRAAVSAGLKAHAVGLLEKIKFKDVLKRKGGLQEYIACRNQILGLWCKDVTRILHLVDCGVTDTPSMDEPPRFPLIREIYAFLNLRGYINAGIASEKAKSESDIKYDHELGEKKVGDVSVASAAGSEEGVSVMVKNSDASNAENDVSAGCEVILEDAEGRDPVIVNNLDLPKSVEHEQELVHDLEYGTPDSIPVKLVGDVPGKAPSHLTNHSRNGWHPIHSSDECVGGDQQQQSNSDVRKKVIVIGAGPAGLTAAKHLHRQGFAVTILEARNRLGGRVHTDRSSLSVPVDLGASIITGVEADVASERRPDPSSLICTQLGLELTVLNSDCPLYDIITCKKVPVDMDEALEAEYNSLLDDMVLLVAQKGEHAMAMSLEEGLEYALKRRRMARGMDVCSEEEVLSPFERRVMNWHFANLEYGCAAMLKKVSLPNWNQDDLYGGFGGAHCMIKGGYSTVVESLGGGLDVHLNHVVADISYSTDDTGFNGNQCAKVKVSTTNGCMFLGDAVLITVPLGCLKAETIKFSPPLPEWKRLSIQRLGFGVLNKIVLEFPEVFWDDSVDYFGATAEETKWRGQCFMFWNVRKTVGAPVLIALVVGQAAVERQFMSSSDNVSHALMVLRKLFGEAMVPDPVASVVTDWGRDPFSYGAYSYVAVGASGEDYDILARPVGNCLFFAGEATCKEHPDTVGGAMMSGLREAVRMIDVLSDGYDFTAEVEAMEAAQRQSECENDEVGDIITRLDAVKLSDALYKNSLDGAILTTEALLQDLFFSAKTTAGRLQVAKELLNLPAETLKSFAGTKEGLTVLNSWILDSMGKDGTQLLRQCVRILVLVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSIWLEVFRKEKAANGGLKLSKSVSAVELLKRKSNKDSSSGKPPLHAYNSTLDSRGNLPTSASAAIPLQSDVNMKNDNSKQLKLEMENSSKSDISSSRSRGSFGKQDAEMEDNNIAMTEEEQAAFAAAEAARAAALAAAKAYASSEAKSAMQLPKIPSFHKFARREHYAQMDECEYKKKLSGSVLGRQDCISEIDSRNCRVRNWSVEFSAACVNLESSRMSADNLSQRSHSNEIVSQLNFREHSGESAPVDSSIYTKAWVDTAGSVGMKDYHAIERWRTQAAAAHVNDEEDSNTNWHKPTWNSDQVANESSISQVTINKEPIRNNHRGADRIKQAVVDYVASLLMPLYKARKIDKDGYKSIMKKSATKVMEQATDAEKGMTVSEFLDFKRRNKLDEPTACATWNTTNAIYVPRHLRILVLIVDATALLRSCFLEGSISYSSLFSIEFNSSSDGKVLVGAAPHVK 2101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25149027 25162615 + CaPI482276_08g019200.1 Cam08g1920 133971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1920 2101 MobiDBLite consensus disorder prediction 1677 1711 - -
Cam08g1920 2101 MobiDBLite consensus disorder prediction 199 239 - -
Cam08g1920 2101 Pfam SWIRM domain 789 862 IPR007526 GO:0005515(InterPro)
Cam08g1920 2101 Gene3D - 772 875 IPR036388 -
Cam08g1920 2101 Pfam Flavin containing amine oxidoreductase 1022 1473 IPR002937 GO:0016491(InterPro)
Cam08g1920 2101 SUPERFAMILY FAD-linked reductases, C-terminal domain 1311 1422 - -
Cam08g1920 2101 MobiDBLite consensus disorder prediction 1723 1744 - -
Cam08g1920 2101 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1569 1654 IPR035441 -
Cam08g1920 2101 Gene3D - 1101 1428 - -
Cam08g1920 2101 MobiDBLite consensus disorder prediction 1669 1711 - -
Cam08g1920 2101 MobiDBLite consensus disorder prediction 1725 1740 - -
Cam08g1920 2101 PANTHER FLAVIN MONOAMINE OXIDASE 1002 1475 IPR050281 GO:0016491(PANTHER)
Cam08g1920 2101 MobiDBLite consensus disorder prediction 590 651 - -
Cam08g1920 2101 MobiDBLite consensus disorder prediction 212 236 - -
Cam08g1920 2101 SUPERFAMILY Homeodomain-like 774 868 IPR009057 -
Cam08g1920 2101 SUPERFAMILY FAD/NAD(P)-binding domain 1011 1475 IPR036188 -
Cam08g1920 2101 MobiDBLite consensus disorder prediction 119 140 - -
Cam08g1920 2101 Gene3D - 1014 1471 IPR036188 -
Cam08g1920 2101 ProSiteProfiles SWIRM domain profile. 772 872 IPR007526 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1920 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1920 Cam-Chr8:25149027 Cam11g1864 Cam-Chr11:31199261 6.90E-84 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1051 . Blo12g00895 Bda01g00502 . . Bpe04g00232 Bma04g00227 Bma01g02351 . . . . . . . . . Bhi04g00234 . . . . . . Cla08g01440 Cam08g1920 Cec08g1496 . Clacu08g1610 . Cre08g1396 . . . . . . . Cme03g01899 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004381 1 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52463 PF01593 Amino_oxidase 1.30E-98 CL0063 Cam TR