Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1924 ATGAACAAAATAATGGGAGGTGAGGAGCTAATACAGGGCGTTATTCAAGATTCAAATGGTCTAGAAGAAACAATTCGTGTTTCTATTAGGTTAAGACCATTGAACGATAAGGAATTGGCTAAAAACGACTCGTCGGATTGGGAATGCATCAACAATAATTCTGTCGTGTTCAGAAGTACTTTACCGGAACGCTCTATGTTTCCCCAATCTTACACATTTGATAGAGTATTTGGAGTTGACAGTACAACGAAGCAAGTTTATGAAGAAGGGGCCAAAGAAGTTGTTCTTTCTGTGGTCAATGGGATTAACTCAACAATTTTTGCATATGGGCAAACAAGCAGTGGAAAGACTTTCACCATGAATGGAGTCACTCAATATTCTGTGGCAGACATTTATAATTACATGGAGTCGCATCGAGACAGAGAGTTTGTGCTGAAGTTTTCAGCGATTGAGATATACAATGAAGCTGTTAGAGATCTCCTTAGCTTAGAAAATATCCCACTTAGACTGCTTGATGATCCTGAGAAAGGAACTGTTGTTGAGAAACTTACAGAGGAGACACTGAAAGACAGGAATCATCTCCAGGAGCTTCTTTCCTTCTGTGAAGTTCAAAGAAAGATAGGGGAGACATCTCTTAATGAAACCAGCTCCAGATCCCATCAAATCCTAAGACTAACAATTGAAAGCTCCGCTCGCAAATACAAGAAGTCTGAAAGTTCAAGCACTCTCACCGCTACAGTGAATTTTGTTGATCTTGCGGGAAGTGAACGTGCTTCTCAAACAAATTCTGCTGGTACAAGACTGAAAGAAGGTTGTCACATCAATCGTAGTTTGCTGACTTTGGGAACTGTTATTCGCAAATTAAGCAAAGGAAGGAACGGACATATACCTTATAGAGATTCCAAGTTAACACGCATACTGCAGAATTCTCTAGGTGGAAATGGTCGAACGGCTATCATTTGTACTATGAGTCCTGCACGTAGCCATGTCGAACAATCAAGAAATACACTGCTATTTGCTACTTGTGCAAAAGAGGTGAGTACAAATGCACAAGTGAATGTGGTAGTTTCAGATAAGGCATTGGTGAAGCAGTTGCAAAAAGAATTGGCTAGACTTGAGAGCGAGATGAAGAGCTTAAAACCACTTCCTGTCAAAGGTGATTCTACTTCATTATTGAAAGAGAAAGAACTTCTAATTGAACAGATGGACAAAGAGATAAAGGAATTGACTCGGCAACGTGATCTTGCTCAATATCGAATCGAGAATTTATTGCATTCGGTTGGAGAAGATAGGATATTTAAGCTAAGTGAAAATACAGTACAAACAATACCAGATCTAGTTGACCTAGATCTAGATCTACGTTCTGATGACTCAAGTCTCAAAACTTTTGACACATTTACTGCACATGAAGAGAATAGCCCTCACAAGATTGATCCTCTATTCACTATGAGTCATGAGGACAATTTTCTACTGGATAGCAGTACTCCTGAATTGGCTGGACCTGATCCTTATCAGGACTGGGAAGAGATTGCTCAACGTGTTCATGCAAATTCTGAAGATGGGTGTAAGGATGTTCAATGCATTGAACTGGAAGAATCAAAAGAATCAAAAGAATCAAAAGAATCACTAAATGAAAATGGTGATTTAACTTTAGCTAGACTGGAAGACAATGAAGGACAGATGATTAGAAGTTTTGGCACTAATCAAGCGACATCCCCACAAAGGAAGAATAAGGAGATAATTACAAACAAAGATTATACTTATGATGGTTTTATGCCAAAAACAGCTGAGATGCAGAAAACATTGAATTGTATTTTAAATCTTTATCCTTCTGAGCAATCTTTCAGCTCAATTGAAGCAGCGAAATCTCGTTTTCAGAACTTAAAGTTGGCCAGAAGCAAAAGTTGTTTGACTGTTCTAATGACCATCCCACCTTCTACTTTGATTGAAAAGGCAGAAGAGGATAAGAAACCTCGAATCGTTGGATCTGAAGTGAACTTCTCTGGACAAGCAGAAGGTAGTCGGAGAAAGCGCGGTTTAAGCTGTGGGAATTTGGAGGAAAATTTGGACACCAAAGACTCACATTCTGTATGTAGTCACTGTTCGGAAGCCAAACCTTTACAAATAATAGATGAAGATGATGATGATAATACTAGTGTTCTCAACTTTTCTACTGGAAAGAAAGGAAAGGGCAAAAATCGGATAAAGAAGCGATCTGGTTCGAGGCTGGGGAGGGTCTCTAAAAAGGAAGAACCTAAAGAAACCACACAAGAAGTTAACATGGAAGAGGCACAAGAACTTCAGGCTCATTCTGAGTGGGTTCTAGAGTTCCAAGGTCAACAAAGAGATATAATTGAGCTTTGGGATGCTTGCAATGTACCATTGGTCCACAGATCTTATTTCTTCATCCTTTTTAAAGGAGACCCTTCTGATGCTGTATACATGGAAGTAGAGCTTAGAAGGTTGTTCTTTATAAGGGAAGCCATTTCTCGATCAATCAATGCATCGGGAAGGAGCGACACCATCACGCAAGCTTCGAGCTTGAAGGCTCTAAACCGCGAGAGAGAAATGTTGGCGAGGCGAATGAAAAAGAAGTTCTCAGTGAAAGAAAGAGACGCCCTTTACCAGAAGTGGGGTATCGACTTGAAGACGAAGCAACGAAGCATACAATTGGCACGAATGCTTTGGTCGAGAACAAAGGATTTCGACCATATACACGAAAGTGCTGCCCTTGTGGCAAAGCTCATTGGATTTGTGGAACCTTCTCAGGTTTCTAGGGAGATGTTTGGGCTATCCTTCTCACTTCAATCTTTAGATCACAGATCTTTTCCCTGGAAAAGGAACGTGTCTCTCCCTTTTTGA 2862 40.11 MNKIMGGEELIQGVIQDSNGLEETIRVSIRLRPLNDKELAKNDSSDWECINNNSVVFRSTLPERSMFPQSYTFDRVFGVDSTTKQVYEEGAKEVVLSVVNGINSTIFAYGQTSSGKTFTMNGVTQYSVADIYNYMESHRDREFVLKFSAIEIYNEAVRDLLSLENIPLRLLDDPEKGTVVEKLTEETLKDRNHLQELLSFCEVQRKIGETSLNETSSRSHQILRLTIESSARKYKKSESSSTLTATVNFVDLAGSERASQTNSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHIPYRDSKLTRILQNSLGGNGRTAIICTMSPARSHVEQSRNTLLFATCAKEVSTNAQVNVVVSDKALVKQLQKELARLESEMKSLKPLPVKGDSTSLLKEKELLIEQMDKEIKELTRQRDLAQYRIENLLHSVGEDRIFKLSENTVQTIPDLVDLDLDLRSDDSSLKTFDTFTAHEENSPHKIDPLFTMSHEDNFLLDSSTPELAGPDPYQDWEEIAQRVHANSEDGCKDVQCIELEESKESKESKESLNENGDLTLARLEDNEGQMIRSFGTNQATSPQRKNKEIITNKDYTYDGFMPKTAEMQKTLNCILNLYPSEQSFSSIEAAKSRFQNLKLARSKSCLTVLMTIPPSTLIEKAEEDKKPRIVGSEVNFSGQAEGSRRKRGLSCGNLEENLDTKDSHSVCSHCSEAKPLQIIDEDDDDNTSVLNFSTGKKGKGKNRIKKRSGSRLGRVSKKEEPKETTQEVNMEEAQELQAHSEWVLEFQGQQRDIIELWDACNVPLVHRSYFFILFKGDPSDAVYMEVELRRLFFIREAISRSINASGRSDTITQASSLKALNREREMLARRMKKKFSVKERDALYQKWGIDLKTKQRSIQLARMLWSRTKDFDHIHESAALVAKLIGFVEPSQVSREMFGLSFSLQSLDHRSFPWKRNVSLPF 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25183213 25189643 - CaPI482276_08g019240.1 Cam08g1924 133975

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1924 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 380 IPR027417 -
Cam08g1924 953 Coils Coil 355 382 - -
Cam08g1924 953 ProSitePatterns Kinesin motor domain signature. 245 256 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Cam08g1924 953 PANTHER CENTROMERE PROTEIN E 21 936 IPR027640 GO:0003777(InterPro)|GO:0007018(InterPro)
Cam08g1924 953 Gene3D Kinesin motor domain 15 377 IPR036961 -
Cam08g1924 953 SMART kinesin_4 22 354 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam08g1924 953 CDD KISc_CENP_E 24 346 - -
Cam08g1924 953 PRINTS Kinesin heavy chain signature 296 317 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam08g1924 953 PRINTS Kinesin heavy chain signature 101 122 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam08g1924 953 PRINTS Kinesin heavy chain signature 210 227 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam08g1924 953 PRINTS Kinesin heavy chain signature 246 264 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam08g1924 953 Pfam Kinesin motor domain 30 346 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam08g1924 953 ProSiteProfiles Kinesin motor domain profile. 24 346 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam08g1924 953 MobiDBLite consensus disorder prediction 729 743 - -
Cam08g1924 953 Coils Coil 392 426 - -
Cam08g1924 953 FunFam Kinesin-like protein 18 377 - -
Cam08g1924 953 Pfam Domain of unknown function (DUF3490) 776 935 IPR021881 -
Cam08g1924 953 MobiDBLite consensus disorder prediction 722 757 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1924 K11498 - - csv:101212680 1610.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0854 Cam-Chr7:21291836 Cam08g1924 Cam-Chr8:25183213 1.50E-135 dispersed
Cam08g1924 Cam-Chr8:25183213 Cam11g0011 Cam-Chr11:1664200 4.30E-134 dispersed
Cam04g1119 Cam-Chr4:25294441 Cam08g1924 Cam-Chr8:25183213 1.70E-165 transposed
Cam11g0422 Cam-Chr11:5643239 Cam08g1924 Cam-Chr8:25183213 8.80E-76 wgd
Cam02g0492 Cam-Chr2:5578170 Cam08g1924 Cam-Chr8:25183213 1.50E-219 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1046 . . . . . . . . Cmo05g00291 Cmo12g00378 . . . Car12g00404 . . Cpe07g00383 Bhi04g00228 . . . . . . Cla08g01443 Cam08g1924 Cec08g1499 Cco08g1635 Clacu08g1614 . Cre08g1400 . . Cone17ag1382 . . . . Cme03g01903 . Blo18g00788 . . . . Bma01g00738 . . . . Cma12g00427 Cma05g00285 Car05g00235 . Cpe11g00236 . . . . . . . . . . . . . . . Lsi08g01346 Csa02g02109 Chy03g01407 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008666 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 1 1 32