Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1930 ATGGCTGGGTTCTTCTATCTAGGAGGGAGAGAAGGCCCACCAAACAAACAAGAAGAAGAAGAAGAAAGAGAACAGAACTTGTTTCTGTACAGAAATGAAGAGATCTACAACAAGGGTTTTGAGATATGGCCTCAACAATACAACAACAACAACAACAATCATCAACAACAACCAAATCCTTCTCTTACAAACCACTTGTCTTTCGGTGTTGGTCCCAGCCGCCGTAGCTTCATGATCAACGACCCTTCCGATGAGCCTTCCAGATCAGCTTTCACCGTCATGCGGCCTGCCGCTGCCGCCTTCGCCGCCGCCTCTGCCGCTACTGCTGGTGGCATGAATTGCCAAGACTGCGGCAACCAAGCTAAGAAGGATTGCGCTTATTTGCGGTGTAGAACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCAGACACACGTGAAAAGCACGTGGGTTCCGGCTGCGAAACGCCGTGAGAGGCAACAGCAAATTGCCGCCTTACAGCAACAGCAGCAGCAACAAGAACAGTTTCGTGGCGGTGAGAATTCCAAAAGACAAAGAGAAACCCAAACTGCCGCCGCTGTTACCGCTGCCACCGCCTCCGCCTCCGCTTGCCCTCGTTTGCCTTCCATCACGTCAGGGTTAGAACTGGCGCAATTTCCATCAGAAGTGAACTCACCGGCGGTATTTCGGTGCGTAAAAGTAAGTGCAATGGACGATGCAGATGAAGAGTTTGCATATCAGACGGCTGTGAACATCGGTGGTCACGTGTTCAAAGGAATTCTCTACGATCAAGGTCCTGAAATCCGTTACACCGCAGCCGGTGAGAGCTCCTCCGGCCACGGCGGAGATGGATCAACACACCCACTTAACCTAATTGCCGGACCCACTTCCGCCACTACCTCCGCCGCAACTAGCACCAACCCCTCCGCTGCCGCCGCCGCCGCTCCGTTGCTTGACCCTTCTATCTATCCAGCTCCTCTAAATGCATTTATGGCTGGTACGCAGTTCTTCCCACCCTCAAGGTCATGA 1026 52.63 MAGFFYLGGREGPPNKQEEEEEREQNLFLYRNEEIYNKGFEIWPQQYNNNNNNHQQQPNPSLTNHLSFGVGPSRRSFMINDPSDEPSRSAFTVMRPAAAAFAAASAATAGGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQIAALQQQQQQQEQFRGGENSKRQRETQTAAAVTAATASASACPRLPSITSGLELAQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIGGHVFKGILYDQGPEIRYTAAGESSSGHGGDGSTHPLNLIAGPTSATTSAATSTNPSAAAAAAPLLDPSIYPAPLNAFMAGTQFFPPSRS 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25232297 25233730 + CaPI482276_08g019300.1 Cam08g1930 133981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1930 341 NCBIfam LRP1 C-terminal domain 217 265 IPR006511 -
Cam08g1930 341 NCBIfam putative zinc finger domain, LRP1 type 113 155 IPR006510 -
Cam08g1930 341 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 335 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Cam08g1930 341 Pfam Domain of unknown function (DUF702) 111 266 - -
Cam08g1930 341 MobiDBLite consensus disorder prediction 271 303 - -
Cam08g1930 341 MobiDBLite consensus disorder prediction 167 186 - -
Cam08g1930 341 MobiDBLite consensus disorder prediction 277 303 - -
Cam08g1930 341 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2879 Cam-Chr5:35818112 Cam08g1930 Cam-Chr8:25232297 1.50E-27 dispersed
Cam08g1930 Cam-Chr8:25232297 Cam09g1389 Cam-Chr9:19972497 1.30E-69 dispersed
Cam01g2041 Cam-Chr1:33548445 Cam08g1930 Cam-Chr8:25232297 1.90E-60 wgd
Cam05g2038 Cam-Chr5:29063285 Cam08g1930 Cam-Chr8:25232297 4.00E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52465 PF05142 DUF702 5.10E-68 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1930 K27807 - csv:101213154 534.258