Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1932 ATGGATCTGCTGCGCTCGGAGCCAATGCAATTGGTGCAGCTGATCATTCCTAATGAATCGGCGCACAGGACGATTTCTTACCTCGGCGACCTCGGTCTCTTCCAATTCAACAATGTGAGTCACATTGCATTGGAAATCATCTTCTGGTTCCGTTTCCTTGTTCGTAATTGTATTGTGATTCTGAGTTTACTACTTGACTTCAATTTCGTAAAGCCTAATGTAGGTTTCCGAAGTTCTGGTTCAGTTTCTTTGTTTGTAATCGCCAATCCCATTGTAATTCTGAGTTTACTACTTGAATTTAATTTCGTAAAGGCTAATCTCAATGCATCTAGAAGCCCATTCCAGCGGACGTATGCTGCCCAGCAGTTATGTGCAGTATTTTTAGACAAAATATCTTATATTTGGTTTGATGGTGTTTGTTTGCCTGCTACTTTTACCAAGCAGATTAAAAGATGTGGGGAAATGGCTCGGAAGCTACGGTTTTTCAGGGAGCAAATGACAAAGGCTGGTATACTGCCGTCATCAAATTCTCTAGGGACTCCTGATTTTGATCTGGATAATTTGGAGGTTAAACTTGGAGAATTTGAGGTAGAGTTGTTAGAGATAAATGACAACAACGAAAAGTTACAACGCAATTATAGTGAGCTATTGGAATATAAGCTTGTACTCCAGAAGGTTGGTGAGTTTTTCCATCTTGCTCAAAGCATAGCTGCAGCTCAGCAAAGAGAACTGGAAGTGCAGCAAAACGGTGAAGGATCCATTGACACTCCCTTATTATTGGAACAAGAAATGACAACCGATTCAACGAAACAAGTTAAACTAGGATATATCAGTGGTCTAGTTCCGAGAGAAAAGGCAATGACTTTTGAAAGGATTTTGTTTCGTTCAACTAGGGGCAATCTGTATCTGAGACAAGCTGTGGTTGATGGTTCCGTCACTGATCCTGTAACTGCGGAGAAGGTTGAGAAAAATGTGTTTGTCATATTTTATTCTGGAGAGAGAGCAAAGGATAAAATTCTGAAAATATGCGACGCTTTTGATGCAAACCGTTACCCATTCACTGATGACTTGAGCAAACAAATTCAGATGATTACAGAGCTTCATCAGAAAATAGAGCCAGTTGGTGGCAAAGTAGTGTCTGGAAAACTCTCTGAATTGAAGACTACCATTGATATGGGGCAACTGCACCGAAGTAAACTCTTGCAGACGATTAGCCATCAGTATGAGCTGTGGAATCTTCTGGTAAAGAAGGAAAAATCTGTTTACCACACTTTGAATATGCTCAGTGTTGATGTTACAAAGAAATGCCTTGTAGGTGAAGGTTGGTGTCCTGTTTTTGCAACAAATCAGATTCAAAGTGTGATGCAGATGGCAACCCTTGACAGCAACTCACAAATCGAGGCTATCTTTCATGTTTTGCAAACAAAGGAAGCACCACCAACATATTTCCGCACAAACAAATTTACTTCTTCGTTTCAAGAAATCGTGGATGCATATGGGGTTGCTAAGTATCAGGAAGCAAATCCCGGAGTCTACACTATTGTCACCTTCCCTTTCCTGTTTGCTGTAATGTTTGGCGATTGGGGCCATGGAATATGCTTGTTGCTGGCAACATTATATTTTATAATAAGGGAGAAGAAGTTTTCCAGCCAGAAACTTGGAGATATCATTGAAATGACTTTTGGAGGTCGTTATGTTATCATGATGATGGCACTTTTTTCGATCTACACAGGACTTATCTATAATGAATTCTTTTCTGTCCCATTTGAACTGTTTGGGCCTTCTGCATACGGTTGTCGTGATACTTCATGCAGGGATGCTACTACCATTGGTTTAATAAAGGTTCGTGATACATATCCATTTGGTGTGGATCCTAAGTGGCATGGCACGCGAAGTGAGTTACCTTTTCTCAACTCTTTGAAGATGAAGATGTCTATCCTAGTGGGAGTAGCTCAAATGAATCTAGGAATTATACTGAGCTACTTCAATGCGAAATTCTTTGGAGAAAACATTAACATCTGGTACCAATTTGTTCCACAGATGATATTCTTGAACAGCTTATTTGGTTACCTCTCACTTCTCATAATTGTAAAATGGTACTCTGGATCTCAAGCTGATCTGTATCACGTAATGATATATATGTTCTTGAGTCCTACTGATGATCTAGGTGAAAATCAGCTTTTCGAAGGACAGAAGTTTCTTCAGAGGCACCAAGGTCAATCCTACTCCGTACTTCACAACACAGATGAGAATCATGAAATGGAACAACACAACGGTTCCCGCGGCCATGAGTTTGATTTCAGTGAGGTTTTTGTACACCAACTTATACATACCATAGAGTTTGTTCTTGGTGCAGTCTCTAACACAGCATCCTATCTTCGTCTATGGGCCCTCAGTCTAGCGCATTCGGAGTTGTCGAGTGTATTCTATGACAAGGTTTTACTCCTAGCTTGGGGGTTCAATAGTTTGATCATCCGAATATTAGGAATAGCCGTTTTCATTTGTGCAACTGTCGGAGTTTTACTAATTATGGAAACTCTAAGCGCATTCCTACACGCCTTGAGGCTCCATTGGGTGGAGTTTCAGAACAAATTCTACGCAGGAGATGGATTCAAATTTTCTCCCTTCTCATTTTCGTTGCTTCGGGATGAGGATGAGTAG 2661 40.59 MDLLRSEPMQLVQLIIPNESAHRTISYLGDLGLFQFNNVSHIALEIIFWFRFLVRNCIVILSLLLDFNFVKPNVGFRSSGSVSLFVIANPIVILSLLLEFNFVKANLNASRSPFQRTYAAQQLCAVFLDKISYIWFDGVCLPATFTKQIKRCGEMARKLRFFREQMTKAGILPSSNSLGTPDFDLDNLEVKLGEFEVELLEINDNNEKLQRNYSELLEYKLVLQKVGEFFHLAQSIAAAQQRELEVQQNGEGSIDTPLLLEQEMTTDSTKQVKLGYISGLVPREKAMTFERILFRSTRGNLYLRQAVVDGSVTDPVTAEKVEKNVFVIFYSGERAKDKILKICDAFDANRYPFTDDLSKQIQMITELHQKIEPVGGKVVSGKLSELKTTIDMGQLHRSKLLQTISHQYELWNLLVKKEKSVYHTLNMLSVDVTKKCLVGEGWCPVFATNQIQSVMQMATLDSNSQIEAIFHVLQTKEAPPTYFRTNKFTSSFQEIVDAYGVAKYQEANPGVYTIVTFPFLFAVMFGDWGHGICLLLATLYFIIREKKFSSQKLGDIIEMTFGGRYVIMMMALFSIYTGLIYNEFFSVPFELFGPSAYGCRDTSCRDATTIGLIKVRDTYPFGVDPKWHGTRSELPFLNSLKMKMSILVGVAQMNLGIILSYFNAKFFGENINIWYQFVPQMIFLNSLFGYLSLLIIVKWYSGSQADLYHVMIYMFLSPTDDLGENQLFEGQKFLQRHQGQSYSVLHNTDENHEMEQHNGSRGHEFDFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLAWGFNSLIIRILGIAVFICATVGVLLIMETLSAFLHALRLHWVEFQNKFYAGDGFKFSPFSFSLLRDEDE 886
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 25250437 25260379 + CaPI482276_08g019320.1 Cam08g1932 133983

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1932 886 PIRSF ATP6V0A1 137 738 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
Cam08g1932 886 PIRSF ATP6V0A1 735 886 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
Cam08g1932 886 PIRSF ATP6V0A1 1 58 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
Cam08g1932 886 PANTHER VACUOLAR PROTON ATPASES 1 883 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
Cam08g1932 886 Pfam V-type ATPase 116kDa subunit family 746 878 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cam08g1932 886 Pfam V-type ATPase 116kDa subunit family 144 736 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cam08g1932 886 Coils Coil 185 219 - -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1932 K02154 - - csv:101209817 1340.1
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2151 Cam-Chr2:34301435 Cam08g1932 Cam-Chr8:25250437 6.10E-270 dispersed
Cam02g0507 Cam-Chr2:5724712 Cam08g1932 Cam-Chr8:25250437 0.00E+00 wgd
       

Deco-Alignment


Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1033 . . . . . . . . Cmo05g00282 Cmo12g00383 . . . Car12g00408 . . Cpe07g00387 Bhi04g00220 . . . . . . Cla08g01448 Cam08g1932 Cec08g1506 Cco08g1644 Clacu08g1622 . Cre08g1408 . . Cone17ag1375 Cone20ag0107 . . . Cme03g01909 Blo17g00765 . Bda08g01248 . . Bpe05g00122 . Bma05g00148 . . . Cma12g00431 Cma05g00279 Car05g00230 . Cpe11g00231 . . . . . . . . . . . . . . . Lsi08g01352 Csa02g02102 Chy03g01413 .
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam08g2135 . 184 1181 Primary Pumps ATPases(2) AT1G10130 83.2 0.0e+00 1628.2
Cam02g2151 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.6 0.0e+00 1345.9
Cam02g0507 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.7 4.3e-292 1000.7
Cam08g1932 . 1 881 Primary Pumps ATPases(2) AT2G28520 53.8 4.4e-268 921.0
Cam02g0507 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.6 0.0e+00 1231.9
Cam08g1932 . 1 886 Primary Pumps ATPases(2) AT2G21410 63.0 0.0e+00 1091.6
Cam02g2151 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.6 2.8e-299 1024.6
Cam02g0507 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.8 0.0e+00 1233.8
Cam08g1932 . 1 886 Primary Pumps ATPases(2) AT4G39080 63.5 0.0e+00 1092.0
Cam02g2151 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.5 3.1e-298 1021.1
Cam08g1921 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cam08g1922 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cam11g1596 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cam08g1921 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cam08g1922 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cam11g1596 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 3.1e-66 248.4
Cam08g1921 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Cam08g1922 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Cam11g1596 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Cam11g1596 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 5.4e-53 203.8
Cam08g1921 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cam08g1922 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cam08g1758 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.1e-70 261.9
Cam05g1873 . 4 180 Primary Pumps ATPases(2) AT2G25610 81.4 2.0e-69 259.2
Cam08g1921 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Cam08g1922 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Cam11g1596 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Cam05g1873 . 11 180 Primary Pumps ATPases(2) AT4G32530 76.5 5.2e-72 267.7
Cam08g1758 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.5e-71 266.2
Cam03g0179 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.5 0.0e+00 1670.6
Cam03g0179 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.2 0.0e+00 1670.2
Cam08g2135 . 184 1181 Primary Pumps ATPases(2) AT1G10130 83.2 0.0e+00 1628.2
Cam03g0179 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.6 0.0e+00 1318.9
Cam03g1749 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 3.8e-57 217.6
Cam02g0414 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.4e-268 920.2
Cam10g1999 . 62 169 Primary Pumps ATPases(2) AT3G01390 80.6 3.7e-37 151.0
Cam01g0824 . 69 444 Primary Pumps ATPases(2) AT1G12840 83.8 3.8e-182 634.4
Cam09g2252 . 1022 1282 Primary Pumps ATPases(2) AT3G58730 82.4 7.8e-118 420.2
Cam10g1609 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.4 2.0e-206 715.3
Cam08g1921 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Cam08g1922 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Cam11g1596 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Cam02g0414 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 2.8e-270 927.5
Cam05g1548 . 1 182 Primary Pumps ATPases(2) AT1G64200 73.5 1.9e-65 245.7
Cam02g0414 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.3e-266 912.5
Cam02g2151 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.6 0.0e+00 1345.9
Cam02g0507 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.7 4.3e-292 1000.7
Cam08g1932 . 1 881 Primary Pumps ATPases(2) AT2G28520 53.8 4.4e-268 921.0
Cam10g1191 . 122 463 Primary Pumps ATPases(2) AT3G28715 92.7 2.7e-187 651.4
Cam05g1548 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.0 1.2e-90 329.7
Cam09g0163 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.3 0.0e+00 1171.4
Cam02g0414 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.4e-268 920.2
Cam02g0414 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 2.8e-270 927.5
Cam02g0414 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.3e-266 912.5
Cam01g0824 . 69 444 Primary Pumps ATPases(2) AT1G12840 83.8 3.8e-182 634.4
Cam09g2252 . 1022 1282 Primary Pumps ATPases(2) AT3G58730 82.4 7.8e-118 420.2
Cam05g1548 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.0 1.2e-90 329.7
Cam05g1548 . 1 223 Primary Pumps ATPases(2) AT3G08560 68.6 6.6e-76 280.8
Cam05g1548 . 1 182 Primary Pumps ATPases(2) AT1G64200 73.5 1.9e-65 245.7
Cam03g1749 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 3.8e-57 217.6
Cam10g1999 . 62 169 Primary Pumps ATPases(2) AT3G01390 80.6 3.7e-37 151.0
Cam10g1609 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.4 2.0e-206 715.3
Cam02g2151 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.6 0.0e+00 1345.9
Cam02g0507 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.7 4.3e-292 1000.7
Cam08g1932 . 1 881 Primary Pumps ATPases(2) AT2G28520 53.8 4.4e-268 921.0
Cam02g0507 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.6 0.0e+00 1231.9
Cam08g1932 . 1 886 Primary Pumps ATPases(2) AT2G21410 63.0 0.0e+00 1091.6
Cam02g2151 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.6 2.8e-299 1024.6
Cam02g0507 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.8 0.0e+00 1233.8
Cam08g1932 . 1 886 Primary Pumps ATPases(2) AT4G39080 63.5 0.0e+00 1092.0
Cam02g2151 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.5 3.1e-298 1021.1
Cam08g1921 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cam08g1922 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cam11g1596 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cam11g1596 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 5.4e-53 203.8
Cam08g1921 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cam08g1922 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cam08g1921 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Cam08g1922 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Cam11g1596 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Cam08g1921 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cam08g1922 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cam11g1596 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 3.1e-66 248.4
Cam08g1921 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Cam08g1922 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Cam11g1596 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Cam05g1873 . 11 180 Primary Pumps ATPases(2) AT4G32530 76.5 5.2e-72 267.7
Cam08g1758 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.5e-71 266.2
Cam08g1758 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.1e-70 261.9
Cam05g1873 . 4 180 Primary Pumps ATPases(2) AT2G25610 81.4 2.0e-69 259.2
Cam10g1191 . 122 463 Primary Pumps ATPases(2) AT3G28710 95.0 2.3e-194 674.9
Cam10g1191 . 122 463 Primary Pumps ATPases(2) AT3G28715 92.7 2.7e-187 651.4
Cam03g0179 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.5 0.0e+00 1670.6
Cam03g0179 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.6 0.0e+00 1318.9
Cam08g2135 . 184 1181 Primary Pumps ATPases(2) AT1G10130 83.2 0.0e+00 1628.2
Cam03g0179 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.2 0.0e+00 1670.2
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000455 4 5 5 3 4 3 5 3 3 3 3 3 6 3 3 5 3 6 6 3 3 3 3 3 3 3 3 7 4 4 115