Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1935 ATGGAAGATGAGCAGGGCGGCGGCGGTAGTAGTAGTAACTTGGATACAGGAAAGGCGGACAGATCAGTGTGGCTGATGAAGTGCCCGTTGCTAGTCGCTAAGTCATGGCAGTCTCATCCTCCATCTGATCCTCTCCCTCTCGCTAAGGTCATTCTTTCTCTCGATCCTCTTCAATCCGACGAATCCTCTTCTCTACAGTTCAAGATGGAGATGGCTGGAACTGAGACTGGAAACGTGCCAAAAAGTTTTTCCCTAAATATGTTTAAAGACTTTGTTCCAATGTGTGTCTTTTCAGAGGCAAGTCAAGGTAAGATGTCAATGGAAGGGAAAGTGGAACATAAATTTGATATGAAGCCTCATAGTGAAAATCTTGAAATGTATGGGAAATTGTGCCGTGAAAGGACAAACAAATCCATGGTTAAGAATAGACAAATCCAAGTGATAGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGCATGGTTGGTTTGATCAGTTCAACTTCAAAGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAGACGTGAAAAGAACTAGAAGAGATCGTGGGGAACTAGAAGATATAATGTTCAAGCTATTTGAAAGACAGCCGAATTGGGCCCTAAAGCAGCTAGTCCAAGAGACTGATCAACCTGCACAATTCCTGAAAGAGATACTGAATGAGCTTTGTGTGTACAACAAAAGAGGGACTAATCAAGGAACATACGAGCTTAAACCCGAATACAAGAAATCTGCTGAAGATACCGGCGGAGAGTAG 783 43.55 MEDEQGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSAEDTGGE 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25279147 25283663 + CaPI482276_08g019350.1 Cam08g1935 133986

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1935 260 CDD TFIIF_beta 13 119 - -
Cam08g1935 260 Pfam TFIIF, beta subunit HTH domain 188 251 IPR040450 -
Cam08g1935 260 SUPERFAMILY Winged helix DNA-binding domain 186 252 IPR036390 -
Cam08g1935 260 PANTHER GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 11 256 IPR003196 GO:0005674(PANTHER)|GO:0005674(InterPro)|GO:0006366(InterPro)|GO:0006367(InterPro)|GO:0006367(PANTHER)
Cam08g1935 260 SUPERFAMILY Rap30/74 interaction domains 11 120 IPR011039 GO:0006367(InterPro)
Cam08g1935 260 Pfam TFIIF, beta subunit N-terminus 21 133 IPR040504 -
Cam08g1935 260 Gene3D - 186 253 IPR036388 -
Cam08g1935 260 FunFam General transcription factor IIF subunit 2 186 254 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1935 K03139 - - csv:101210064 516.924
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1935 Cam-Chr8:25279147 Cam09g2091 Cam-Chr9:35453227 1.80E-82 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1029 . . . . . . . . . Cmo12g00385 . . . Car12g00411 . . Cpe07g00389 Bhi04g00216 . . . Hepe10g0596 . . Cla08g01450 Cam08g1935 Cec08g1509 Cco08g1648 Clacu08g1625 . Cre08g1411 . . Cone17ag1373 Cone20ag0109 . . . Cme03g01911 Blo17g00767 . Bda08g01249 . . Bpe05g00121 . Bma05g00146 . . . Cma12g00434 . . . . . . . . . . . . . . . . . . . Lsi08g01354 Csa02g02100 Chy03g01415 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008633 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 35