Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1936 ATGGCGGACGCAGGCTCCGTCTCCCACAAGAGAATGTCATGTTCTATCCCCGAGAGGTTCCAGCTCCATGCGGCCATGTTGGCCTTGCAATTCGGCTATGCCGGTTTCCATGTCGTCTCTAGAGCTGCTCTCAACATGGGCATCAGTAAACTTGTCTTCCCTGTCTACCGAAACGTCATCGCTTTACTCCTCCTCCTCCCCTTCGCATATTTCATCGAAAAGAAAGATAGGCCTGCACTCACTGTCAACTTTGTCCTTCAGTTCTTCCTACTCGCTCTTGTTGGAATTACAGCCAATCAAGGGTTTTATTTGCTGGGTTTGGATAATACTTCCCCAACCTTTGCTTCTGCTATTCAAAATTCTGTCCCTGCCATTACTTTCCTCATGGCTGCACTTCTCAGGATTGAGCAAGTGCGACTGAACCGAAAAGATGGGATAGCGAAGGTGATGGGTACAATATGTTGTGTAGCCGGAGCGACGGTGATCACGTTATACAAAGGGCCCACCATCTACAGCCCAGCAACGACAACGGTGATGGTACAAGAGACAGCAGAGACGGCGGGGACGATGCTGATGGGGCCAGGAATGTTCCCGTCGTTAGGTGACGCAAAGGGGAAAAGCTGGACGTTAGGGTGCGTTTACTTGATCGGACACTGCTTGTCGTGGTCGGCGTGGCTAGTCCTACAAGCACCGGTGCTGAAAAAATATCCGGCTCGCCTCTCAGTTACCTCCTTCACTTGCTTCTTTGGCCTCATCCAATTCCTCATCATCGCCCTCGCCTTCGAGCGCGACGCTCAGGCTTGGCTCTTCCACTCCGGCGCTGAAGCCTTTAGCATCGTTTATGCTGGGGTGGTGGCTTCGGGGATAGCGTTTGCTGTACAGATATGGTGCATTGACAGAGGTGGCCCGGTCTTCGTTGCTGTCTACCAACCGGTTCAGACCTTCGTTGTTGCTCTCATGGCTTCCTTCGCTTTGGGCGAGGAGTTCTATTTGGGAGGGATCATAGGAGCGGTGCTGATTATATCAGGACTCTACCTTGTGCTATGGGGAAAGAGCGAAGAAAAGAAGATCTTATTGGAAAGAGCTGTGATCCAGTCCGCCCCGGACCACGGCAGCAGCAGAACAAGTAGCCACGTCAAGCCGTCCATTACCCAGCCACTTCTCCATCCTACGGCTGACAATGTTTGA 1188 52.1 MADAGSVSHKRMSCSIPERFQLHAAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNVIALLLLLPFAYFIEKKDRPALTVNFVLQFFLLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAALLRIEQVRLNRKDGIAKVMGTICCVAGATVITLYKGPTIYSPATTTVMVQETAETAGTMLMGPGMFPSLGDAKGKSWTLGCVYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSFTCFFGLIQFLIIALAFERDAQAWLFHSGAEAFSIVYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVALMASFALGEEFYLGGIIGAVLIISGLYLVLWGKSEEKKILLERAVIQSAPDHGSSRTSSHVKPSITQPLLHPTADNV 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25300672 25304872 + CaPI482276_08g019360.1 Cam08g1936 133987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1936 395 MobiDBLite consensus disorder prediction 368 395 - -
Cam08g1936 395 Pfam EamA-like transporter family 27 163 IPR000620 GO:0016020(InterPro)
Cam08g1936 395 Pfam EamA-like transporter family 210 348 IPR000620 GO:0016020(InterPro)
Cam08g1936 395 PANTHER WAT1-RELATED PROTEIN 24 367 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cam08g1936 395 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 166 - -
Cam08g1936 395 SUPERFAMILY Multidrug resistance efflux transporter EmrE 252 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1595 Cam-Chr6:27421547 Cam08g1936 Cam-Chr8:25300672 4.60E-109 dispersed
Cam08g1936 Cam-Chr8:25300672 Cam10g1612 Cam-Chr10:29909522 1.40E-62 dispersed
Cam01g0131 Cam-Chr1:1637295 Cam08g1936 Cam-Chr8:25300672 9.50E-58 transposed
Cam03g0810 Cam-Chr3:9362500 Cam08g1936 Cam-Chr8:25300672 3.50E-57 transposed
Cam11g1626 Cam-Chr11:29009882 Cam08g1936 Cam-Chr8:25300672 2.90E-61 transposed
Cam05g2039 Cam-Chr5:29088439 Cam08g1936 Cam-Chr8:25300672 9.60E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1936 - - - 0.0