Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1937 ATGGGAGTTGCCGCGTTTCGTCTTGGGTTTTCTGTTCTTTTAGTATTCGCTTTTGCGCTATGTGATTTGGGCGTTTGTAATGGCGGAATCACGAGCGGTTTTGTTCGGAATGACGACGTTGCGTCGGATATGCCGCTTGATAGCGACGTCTTTAGGTCTCCTCCTGGTAAAAATGCCGCTCAACAGGTTCATATAACACAGGGGGATTTTGAAGGGAAGAGTGTGATACTCTCTTGGGTGACACCGGATAAACCAGGTTCAAACAGAGTGGTTTATTGGGCTGAAAACAGTGACGTTAGAAACCATGCTGAAGGCTCTTTTGTTTCCTACAAGTATTTCAACTACACATCTGGTTACATTCATCACTGCACCATTGACAACTTAGAGTATGATACTAAATATTTCTACGTGATTGGGTTTGGAAGTCTATCACGAAGGTTTTGGTTTACAACCCCTCCTAAAGTTGGCCCTGATGTGCCTTATACTTTTGGTCTTATAGGGGATCTTGGTCAAACACACGATTCCAATAGGACACTTACACACTATGAATTAAACCCAACAAAAGGACAGACTATGTTGTTCCTTGGAGACTTGTCTTATGCAGACCGTTATCCATTTCATGATAACACCAGATGGGACACATGGGGGAGGTTTGTGGAAAGAAGTGCAGCTTATCAACCTTGGATTTGGACTGCAGGGAATCATGAACTTGATTATGCTCCTGAAATTGGTGAAAGTGAACCATTTAAGCCTTATTTCCATCGTTACCGTGTCCCATATAATGCATCAGATGGCTCCTCTCACCTTTGGTACTCCATTAAGAGAGCTTCAGCTTATATAATCGTCTTGTCCTCTTACTCATCATATGTGAAAAGCAGCCCTCAATATAAATGGCTACAGAATGAGCTGCTGAAGGTAAACAGGGACGAGACTCCATGGCTCATAGTTCTTATGCATACTCCAATGTACAGCAGTTATGTTCACCATTACATGGAAGGAGAAAGCATGAGAGTGGTCTTCGAGCCGTGGTTCGTCAAATATAAAGTTGATGTTGTCTTTGCCGGTCATGTTCATGCCTACGAACGATCTGAACGAATATCAAATATAGCATACAACGTTGTAAACGGGTTATGTTCTCCAGTTCATGATATAGATGCTCCAGTTTATATAACTATTGGAGATGGTGGAAACTCTGAAGGATTAGTAACTGAGATGACTGAACCACAGCCAAATTACTCGGCTTACCGTGAAGCCAGCTTTGGACATGGCACACTGGACATAAAGAACAGAACTCATGCCTACTTTGCTTGGCATAGGAACCAAGACGAATATGCTGTGGAAGCTGATTCCTTTTGGCTGCATAATCGACAATGGTGTCCATTTGGCAGATTCTCCTTTTTACCTCCTCCATCTGATTTGGAAGAGATTGGAAAAGTACAAACAAAGCACAGAATCAGATCAGATAAAAACAGAGCTGAAAAGTCTGATACTGATAAAAAAGAATCAGATATCCGAACCCCACTTGCAATATAG 1533 42.2 MGVAAFRLGFSVLLVFAFALCDLGVCNGGITSGFVRNDDVASDMPLDSDVFRSPPGKNAAQQVHITQGDFEGKSVILSWVTPDKPGSNRVVYWAENSDVRNHAEGSFVSYKYFNYTSGYIHHCTIDNLEYDTKYFYVIGFGSLSRRFWFTTPPKVGPDVPYTFGLIGDLGQTHDSNRTLTHYELNPTKGQTMLFLGDLSYADRYPFHDNTRWDTWGRFVERSAAYQPWIWTAGNHELDYAPEIGESEPFKPYFHRYRVPYNASDGSSHLWYSIKRASAYIIVLSSYSSYVKSSPQYKWLQNELLKVNRDETPWLIVLMHTPMYSSYVHHYMEGESMRVVFEPWFVKYKVDVVFAGHVHAYERSERISNIAYNVVNGLCSPVHDIDAPVYITIGDGGNSEGLVTEMTEPQPNYSAYREASFGHGTLDIKNRTHAYFAWHRNQDEYAVEADSFWLHNRQWCPFGRFSFLPPPSDLEEIGKVQTKHRIRSDKNRAEKSDTDKKESDIRTPLAI 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25307450 25310854 + CaPI482276_08g019370.1 Cam08g1937 133988

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1937 510 Gene3D - 156 465 IPR029052 -
Cam08g1937 510 SUPERFAMILY Purple acid phosphatase, N-terminal domain 41 153 IPR008963 GO:0003993(InterPro)|GO:0046872(InterPro)
Cam08g1937 510 FunFam Fe(3+)-Zn(2+) purple acid phosphatase 156 463 - -
Cam08g1937 510 Pfam Purple acid Phosphatase, N-terminal domain 61 151 IPR015914 GO:0003993(InterPro)|GO:0046872(InterPro)
Cam08g1937 510 CDD MPP_PAPs 157 455 IPR041792 -
Cam08g1937 510 Gene3D - 59 155 - -
Cam08g1937 510 MobiDBLite consensus disorder prediction 478 510 - -
Cam08g1937 510 Pfam Iron/zinc purple acid phosphatase-like protein C 386 443 IPR025733 -
Cam08g1937 510 PANTHER ACID PHOSPHATASE RELATED 12 456 IPR039331 GO:0003993(InterPro)
Cam08g1937 510 FunFam Fe(3+)-Zn(2+) purple acid phosphatase 59 155 - -
Cam08g1937 510 Pfam Calcineurin-like phosphoesterase 162 360 IPR004843 GO:0016787(InterPro)
Cam08g1937 510 SUPERFAMILY Metallo-dependent phosphatases 157 459 IPR029052 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1937 K22390 - - csv:101210805 890.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0811 Cam-Chr6:11185423 Cam08g1937 Cam-Chr8:25307450 5.00E-71 dispersed
Cam06g1292 Cam-Chr6:24368702 Cam08g1937 Cam-Chr8:25307450 1.40E-155 transposed
Cam01g2039 Cam-Chr1:33531465 Cam08g1937 Cam-Chr8:25307450 1.30E-181 wgd
Cam02g0509 Cam-Chr2:5751123 Cam08g1937 Cam-Chr8:25307450 1.80E-202 wgd
Cam04g1023 Cam-Chr4:24403136 Cam08g1937 Cam-Chr8:25307450 6.90E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1026 . . . . . . . . . . . . . . Sed04g3913 . . Bhi04g00213 Tan02g0773 Cmetu01g2623 . Hepe02g0485 . . Cla08g01452 Cam08g1937 Cec08g1511 Cco08g1650 Clacu08g1627 . Cre08g1413 . . . . . . . . Blo17g00768 . . . . . . Bma05g00144 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000712 2 3 4 4 1 3 4 3 3 3 3 3 3 3 3 3 3 5 4 3 4 3 3 3 3 3 3 4 3 5 97