Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1938 ATGTTGAAATCTTCATCCAACAACAACAAAAGACCCTCTTCAAGAAAGGGTTGTATGAGAGGCAAAGGAGGCCCTGAAAACGCTTCTTGTACTTATAAAGGTGTTCGTCAAAGAACTTGGGGAAAATGGGTTGCTGAAATTCGAGAGCCAAATCGTGGAGCTCGTCTTTGGCTTGGTACTTTTGATACTTCTCATGATGCTGCTTTAGCCTATGACAATGCTGCTCGTCGTCTTTATGGCTCTGATGCTAAACTCAATCTCCCTCATCTTTCTCCTGTTTCTGCTTCTTCTTCTTCTTCTGATAATGTTGCTGCTAATTCTAATTCTAATTCTAATGCCAATGCCATTGTGGAAGATGTTGCTTCCTCTGTTTCTCATGAAACCAACAATAACAACACTGTATTGCCTAAGAAGAGATTTAGGGAGGAAGAGGAAGAACAAATTGGGGGGCTTTGGAGAGCTATGAGTATTAGTTTAGATGATTCTATTTGGGTTGAAGCAGCTATGTCTTTGGATTTTCCTATTGTTATGGAACATGAGCAGGATCATCATCATCAAGGCTTTTTTGCTGCTAATTTGATGGAAACAAATGGAAATGGTGGATGTGGATGGGATACACTCCAATGGTGTTTATGA 636 40.25 MLKSSSNNNKRPSSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAALAYDNAARRLYGSDAKLNLPHLSPVSASSSSSDNVAANSNSNSNANAIVEDVASSVSHETNNNNTVLPKKRFREEEEEQIGGLWRAMSISLDDSIWVEAAMSLDFPIVMEHEQDHHHQGFFAANLMETNGNGGCGWDTLQWCL 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25311245 25311880 - CaPI482276_08g019380.1 Cam08g1938 133989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1938 211 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1938 211 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1938 211 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677(InterPro)
Cam08g1938 211 FunFam Ethylene-responsive transcription factor 2 30 89 - -
Cam08g1938 211 Gene3D AP2/ERF domain 31 89 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1938 211 Pfam AP2 domain 32 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1938 211 SMART rav1_2 31 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1938 211 MobiDBLite consensus disorder prediction 1 30 - -
Cam08g1938 211 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1938 211 CDD AP2 30 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g1938 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 9 135 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1938 Cam-Chr8:25311245 Cam11g0625 Cam-Chr11:7791580 2.20E-30 dispersed
Cam10g1679 Cam-Chr10:30792010 Cam08g1938 Cam-Chr8:25311245 2.20E-27 transposed
Cam04g1006 Cam-Chr4:24235507 Cam08g1938 Cam-Chr8:25311245 2.90E-13 wgd
Cam05g2040 Cam-Chr5:29094288 Cam08g1938 Cam-Chr8:25311245 2.40E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52466 PF00847 AP2 2.60E-14 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1938 - - - 0.0