Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1951 ATGTCAGCAGAAGAAAATGGGTCCCATCAAGAAAGAGAGATTAAAGAAGAAGAAGAAGAAGAAACAGAAGAGGGGGTTTTTCTTCTTTTTCCCACTTGGGGTTTCTCTGTTTCTTCTGATTCTATCATGGGATCTACTGTTTTCCACTTTCTTCAAGATCAGTGTTTCTTGTCTGTTCTAATGCTGTACCTTATATCTGTTTGCCTTTTGTTGAGCTTCGTTATAGCTGATTATAGTTACATCAACGTGTTCTTGATGGGAATGGCGACCCCTGTAGAGCCTCCAAATGGGGTTAGATCTCAAGGAAAACATTACTTTTCAATGTGGCAGACATTGTTTGAGATTGATACTAAATATGTACCTATCAAGCCGATTGGTCGAGGGGCATATGGTATTGTGTGCTCTTCTGTGAACAGGGAAACAAATGAGAAAGTTGCGATAAAGAGGATACATAATGCGTTTGAGAATCGTATTGATGCGCTCCGGACTTTGCGCGAATTGAAACTCCTTAGGCATCTTCGCCACGAAAATGTCATATGTTTGAAAGATGTGATGATGCCTATCCATAGGAGAAGTTTCAAAGATGTTTATTTGGTTTATGAACTGATGGATACTGATCTGCATCAGATTATTAAGTCTTCTCAAACTCTTACAAACGACCACTGCCAATATTTCCTCTTTCAGTTGCTCCGAGGCCTAAAGTATCTGCATTCTGCGAACATCCTACATCGGGACTTGAAGCCAGGGAACCTCCTTGTCAATGCAAATTGTGATCTTAAGATATGTGATTTTGGGTTAGCGCGTACGAGCAATGGGAAGAATCAATTTATGACAGAGTATGTTGTAACTCGCTGGTATCGAGCCCCAGAACTGCTGCTCTGCTGCGAGAATTACGGGACGTCAATTGATGTGTGGTCTGTAGGATGCATCTTTGCCGAACTTCTCGGTAGGAAACCTATCTTCCCCGGTACAGAATGTCTGAATCAACTCAAATTGATAATTAACTTACTGGGTAGCCAGAGAGAGGAAGATCTTGAGTTCATAGACAATCCAAAGGCAAGAAGGTATATAAAATCCCTTCCATACTCTCCTGGGGCTCCTCTTTCCCGTCTTTATCCAAATGCTCATCCTCTTGCAATTGATCTGCTACAAAAGATGCTCGTCTTTGACCCATCAAAGAGGATTAGTGTAACTGAGGCATTGCAACATCCTTACATGTCTCCACTGTATGATCCAAACAGCAATCCTCCAGCTCAGGTGCCGATTGATCTCGACATAGATGAGGAACTTGGAGAAGAAATGATACGAGAGATGATGTGGAAAGAAATGCTTCATTACCACCCCGAGGATCTGGAAGAACACGCAGAAATGACATGTTTCCACCCCGAACATACTACGAGTAGTACCGCAGTGTATTCTTGA 1422 42.12 MSAEENGSHQEREIKEEEEEETEEGVFLLFPTWGFSVSSDSIMGSTVFHFLQDQCFLSVLMLYLISVCLLLSFVIADYSYINVFLMGMATPVEPPNGVRSQGKHYFSMWQTLFEIDTKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKRIHNAFENRIDALRTLRELKLLRHLRHENVICLKDVMMPIHRRSFKDVYLVYELMDTDLHQIIKSSQTLTNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSNGKNQFMTEYVVTRWYRAPELLLCCENYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIINLLGSQREEDLEFIDNPKARRYIKSLPYSPGAPLSRLYPNAHPLAIDLLQKMLVFDPSKRISVTEALQHPYMSPLYDPNSNPPAQVPIDLDIDEELGEEMIREMMWKEMLHYHPEDLEEHAEMTCFHPEHTTSSTAVYS 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25414855 25418309 - CaPI482276_08g019510.1 Cam08g1951 134002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1951 473 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524(InterPro)
Cam08g1951 473 FunFam Mitogen-activated protein kinase 203 432 - -
Cam08g1951 473 SMART serkin_6 119 406 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g1951 473 SUPERFAMILY Protein kinase-like (PK-like) 111 413 IPR011009 -
Cam08g1951 473 ProSitePatterns MAP kinase signature. 154 257 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g1951 473 Gene3D Transferase(Phosphotransferase) domain 1 203 432 - -
Cam08g1951 473 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 113 444 IPR050117 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cam08g1951 473 Pfam Protein kinase domain 121 406 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g1951 473 MobiDBLite consensus disorder prediction 1 23 - -
Cam08g1951 473 MobiDBLite consensus disorder prediction 1 15 - -
Cam08g1951 473 CDD STKc_TEY_MAPK 113 448 - -
Cam08g1951 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam08g1951 473 Gene3D Phosphorylase Kinase; domain 1 106 442 - -
Cam08g1951 473 FunFam Mitogen-activated protein kinase 105 213 - -
Cam08g1951 473 ProSiteProfiles Protein kinase domain profile. 119 406 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2484 Cam-Chr5:32685211 Cam08g1951 Cam-Chr8:25414855 7.60E-27 dispersed
Cam07g0892 Cam-Chr7:22003091 Cam08g1951 Cam-Chr8:25414855 7.00E-168 dispersed
Cam08g1470 Cam-Chr8:20954724 Cam08g1951 Cam-Chr8:25414855 5.80E-113 dispersed
Cam08g1951 Cam-Chr8:25414855 Cam09g2271 Cam-Chr9:37215197 5.20E-88 dispersed
Cam08g1951 Cam-Chr8:25414855 Cam06g0350 Cam-Chr6:5607397 3.80E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85390 PF00069 Pkinase 4.30E-71 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1951 K20535 - csv:101213478 764.222