Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1965 ATGTCTTCTCGGAGCTTTTTAATTGCGATTAGTGTTCTTGCGGCGGTATTCGTGGCGGAGGCGGGAACGACGGCGATTTTGATTACTGTGGATCAATCCGGGAAGGGGAATTTTACGAAGATTCAAGAGGCGATTGATGCAGTGCCGGAAAATAACACGGAGGAGGTGTTTATTGCGGTGAAGGCGGGGATTTACAGAGAGAAGGTGGTGGTTCCGGCGAATAAACCGTACATTACGATCAGTGGAAGAACAGCAGTGGATACGATCATCAGTTGGAATGATAGCAGAATTACTTATGATTCAGCAACTCTTGCAGTTTTGGCCTCTGATTTCGTTGGACGATACCTCACAATTCAGAATGATTTTGGACGGGGTGCGCAAGCAGTGGCATTACGGGTATCTGGAGATAGAGTATCATTTACCGCTTGTAGATTTTTGGGCCATCAAGATACTCTTCTAGACGACATCGGTCGCCATTACTACAAAAGTTGTTACATTCAAGGAGCCACCGATTTCATTTGCGGAAATGCAGCTTCACTTTTTGAGAATTGCCATCTACGGTCAGTTTCGGACTCCGTCGGGACCATCACGGCGCAACGGAGAGAATCGCCGTCGGAGAATACGGGATTCGTATTCATGGGATGTAAAATCACGGGGATCAACTCGGCGGTTTTAGGAAGGCCATGGGGAGCATTTTCTAGGGTCGTCTTTGGCTTCACTTACATGTCTGACCTTATTCTCCCTCAGGGTTGGGATGACTGGCATGACCCTTCCAAACAAAGCACGGTGTACTATGGGCAATACAAATGTTATGGACAAGGAGCCAATCCTTCCAGAAGGGTACCATGGTCATTTACTAACATGACTACCGAAGAAGCTGCACCATTTTTCACTAAATCCTTTATTGGCGCTGCTGATTGGCTCAGGCCATTGCCAACACATTTCAAGAGAGCCTTCTCTTCCAAACCCTAA 972 47.02 MSSRSFLIAISVLAAVFVAEAGTTAILITVDQSGKGNFTKIQEAIDAVPENNTEEVFIAVKAGIYREKVVVPANKPYITISGRTAVDTIISWNDSRITYDSATLAVLASDFVGRYLTIQNDFGRGAQAVALRVSGDRVSFTACRFLGHQDTLLDDIGRHYYKSCYIQGATDFICGNAASLFENCHLRSVSDSVGTITAQRRESPSENTGFVFMGCKITGINSAVLGRPWGAFSRVVFGFTYMSDLILPQGWDDWHDPSKQSTVYYGQYKCYGQGANPSRRVPWSFTNMTTEEAAPFFTKSFIGAADWLRPLPTHFKRAFSSKP 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25531456 25534238 + CaPI482276_08g019650.1 Cam08g1965 134016

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1965 323 Gene3D - 23 318 IPR012334 -
Cam08g1965 323 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 11 309 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Cam08g1965 323 Pfam Pectinesterase 28 303 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cam08g1965 323 FunFam Pectinesterase 22 312 - -
Cam08g1965 323 SUPERFAMILY Pectin lyase-like 24 315 IPR011050 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1965 K01051 - - csv:101215800 582.408
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1965 Cam-Chr8:25531456 Cam09g0484 Cam-Chr9:4980404 8.80E-63 dispersed
Cam02g1544 Cam-Chr2:28410764 Cam08g1965 Cam-Chr8:25531456 1.20E-57 transposed
Cam03g1502 Cam-Chr3:29957273 Cam08g1965 Cam-Chr8:25531456 1.30E-65 transposed
Cam03g1623 Cam-Chr3:31224800 Cam08g1965 Cam-Chr8:25531456 2.20E-76 transposed
Cam06g0803 Cam-Chr6:11062833 Cam08g1965 Cam-Chr8:25531456 4.10E-61 transposed
Cam07g0909 Cam-Chr7:22382582 Cam08g1965 Cam-Chr8:25531456 7.90E-71 transposed
Cam07g1457 Cam-Chr7:29214877 Cam08g1965 Cam-Chr8:25531456 3.80E-68 transposed
Cam09g2148 Cam-Chr9:36027755 Cam08g1965 Cam-Chr8:25531456 3.20E-72 transposed
Cam10g1130 Cam-Chr10:24405014 Cam08g1965 Cam-Chr8:25531456 1.60E-54 transposed
Cam11g0456 Cam-Chr11:6005467 Cam08g1965 Cam-Chr8:25531456 1.10E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g961 . . . . . . . . . Cmo12g00413 . . . Car12g00436 . . Cpe07g00413 Bhi04g00183 . . . Hepe10g0628 . . Cla08g01478 Cam08g1965 Cec08g1540 Cco08g1677 Clacu08g1655 . Cre08g1439 . . Cone17ag1350 Cone20ag0134 . . . Cme03g01944 . . . . . . . . . . . Cma12g00463 . . . . . . . . . . . . Cla11g00409 Cam11g0456 Cec11g0451 Cco11g0442 Clacu11g0580 Cmu11g0438 Cre11g0920 . Csa02g02065 Chy03g01447 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003216 0 2 0 0 0 2 2 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 3 1 2 3 2 2 51