Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1994 ATGGTATCAGCAGAGAATAATTCTCAATCGGCGAAGGTTGTAGCATCTTCCTCGCCGGGAGGTGAAATCGAGATCATCGACTCCGTGACTCCGGCGAAGAAGAAGCGGAATCTCCCAGGGATGCCAGATCCGGCGGCGGAGGTTATAGCTTTGTCGCCAAAATCACTTCTAGCAACGAACCGATTCGTGTGCGAGATCTGCAACAAAGGATTCCAGCGAGACCAGAACCTGCAGCTTCACCGGCGTGGCCACAACTTACCTTGGAAGCTCCGGCAACGGACGAGCAATGAGATTCGAAAACGAGTTTACGTCTGTCCGGAGCCTTCTTGCGTTCATCATAATCCGGCTAGGGCACTAGGCGATCTAACTGGCATTAAAAAGCACTTCTCCAGAAAGCACTGCGAGAAGAAATGGAAGTGCGAACGGTGCTCGAAGAAATACGCCGTTCAATCGGATTGGAAGGCGCATATGAAAACCTGTGGAACTAGAGAATATAAATGCGATTGCGGAACTTTATTTTCTAGGAGAGATAGTTTCATCACCCATCGGGCTTTTTGTGATGCTTTGGCGTTTGCAAGCTCGGATTCCAATGTGATGGCTACCGCTGCTGCCGCCGGCGTGGCGGTTGCTTCTTCGGCATTGGCCACCGTGCCGCTATCTCCTGCTTTGTCAATTCAAAGCTCAGAAGCACCGGACATTCCCATGGGACCTCCGCCATTAACACCGGCAGCGACAAGCTTAACCTCGGCCGTGGCCTCCAACGTCAACAAAACCAGCCCAACTAACGGCGGTGGTACAAGCGTTTTCGCGGGTGTATTTGCTTCTTCTCCTCCTATTGTTACCAGTGCTGCTGCCCCAAATCCGCCCCATCCACTCACCACCGCCGTCAGCCGATCAGAAGGCGGCAATGAACCCCTAACCACCGTCATTGAGCCCACATCGCTCTCTCTCTCAACGTCCCTTTTCCTCTCCTGTAGAGCCTCAGCCTCATCGGGCTCAACCTCAGCCTCTTCCATTTTTCAAAACCATCCTCCACATTACTCACCGTCGCTCCAGCCCGCCGCCATGTCCGCAACCGCCCTGCTGCAGAAGGCTGCCCAAATGGGCGTCACCAGCTCCAACGCCTCCTCTTTGCTTCGTGCCTCTGGGCTGTCACTGTCACCGTCTCCCGGCCCCACCATCTCCATGACGGCTGGGCTCGGACTTGGATTTGGGAGCGAGCCCACCACGCGGGACCTCCTAGGACTGGGCATGGGCGGCGGCGGAGGAGGAGGAGGTGGGGTTTCCGGCGGCGGTCTTTCTGCTCTTTTCACGTCCTTTGATGGATGTGACGTTGAAGCTGCTTCGCCTTACGGCGGCGGGGGGAATAATGGGCTATGA 1380 55.51 MVSAENNSQSAKVVASSSPGGEIEIIDSVTPAKKKRNLPGMPDPAAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHCEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAFASSDSNVMATAAAAGVAVASSALATVPLSPALSIQSSEAPDIPMGPPPLTPAATSLTSAVASNVNKTSPTNGGGTSVFAGVFASSPPIVTSAAAPNPPHPLTTAVSRSEGGNEPLTTVIEPTSLSLSTSLFLSCRASASSGSTSASSIFQNHPPHYSPSLQPAAMSATALLQKAAQMGVTSSNASSLLRASGLSLSPSPGPTISMTAGLGLGFGSEPTTRDLLGLGMGGGGGGGGGVSGGGLSALFTSFDGCDVEAASPYGGGGNNGL 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25730325 25733172 + CaPI482276_08g019940.1 Cam08g1994 134045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1994 459 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Cam08g1994 459 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 137 161 - -
Cam08g1994 459 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Cam08g1994 459 Gene3D Classic Zinc Finger 62 105 - -
Cam08g1994 459 MobiDBLite consensus disorder prediction 281 308 - -
Cam08g1994 459 FunFam protein indeterminate-domain 5, chloroplastic-like 116 195 - -
Cam08g1994 459 SUPERFAMILY beta-beta-alpha zinc fingers 61 159 IPR036236 -
Cam08g1994 459 FunFam protein indeterminate-domain 12-like 41 109 - -
Cam08g1994 459 SMART c2h2final6 138 158 IPR013087 -
Cam08g1994 459 SMART c2h2final6 62 84 IPR013087 -
Cam08g1994 459 SMART c2h2final6 103 133 IPR013087 -
Cam08g1994 459 MobiDBLite consensus disorder prediction 292 308 - -
Cam08g1994 459 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 164 196 - -
Cam08g1994 459 Pfam Zinc-finger of C2H2 type 62 84 IPR013087 -
Cam08g1994 459 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 99 133 - -
Cam08g1994 459 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 377 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cam08g1994 459 Gene3D Classic Zinc Finger 117 193 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1313 Cam-Chr4:26921445 Cam08g1994 Cam-Chr8:25730325 4.80E-59 dispersed
Cam07g0929 Cam-Chr7:22954845 Cam08g1994 Cam-Chr8:25730325 1.80E-89 dispersed
Cam08g1994 Cam-Chr8:25730325 Cam09g0609 Cam-Chr9:6022191 4.60E-81 dispersed
Cam04g1066 Cam-Chr4:24799697 Cam08g1994 Cam-Chr8:25730325 4.70E-58 transposed
Cam01g1981 Cam-Chr1:33100665 Cam08g1994 Cam-Chr8:25730325 2.40E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52471 PF12874 zf-met 0.0032 CL0361 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1994 K25869 - csv:101217471 709.909