Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam08g2009 | ATGGCGAGCGGGTTTGGGGAATCGACAAGTAGGCAACCTCAAAGCCCTTCTTGTTCCGACAACAATGGTGATGCCAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCCTTTGCGGTCATCTTTTCTGTTGGCCATGCCTTTATAAGTGGCTGCATATTCATTCCCATCCCCAGGAATGTCCAGTTTGCAAGGCTATCATAGAAGAGCAAAAATTGGTTCCTTTATATGGTAGGGGTAAGACATCAACTGACCCAAGATCAAAAAGTATTCCTGGAATTAATATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGTCCTCCCCCAGAACCAAATCCTTTTCCTCACAATGGTTTTGGATTCATGGGAGGTCTTGGAGGGTTTGCCCCAATGGCATCGACAAGGTTTGGCAATTTCACGTTGTCTGCGGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACTTTCCATATGGGTTTCCTAACATGTTTCATGGTAGCCATGGTCACGGCCATGGATACTATCACCAGCTCCGTCAAGGTCAGCAAGATTATTATCTGAAGCGGCTGCTTCTGTTTATTGGTTTTTGTGTTCTTCTTGCCCTAATCTGGCAATAG | 693 | 45.17 | MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANFPYGFPNMFHGSHGHGHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIWQ | 230 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 25826885 | 25827577 | + | CaPI482276_08g020090.1 | Cam08g2009 | 134060 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam08g2009 | 230 | CDD | RING-HC_AtRMA-like | 28 | 72 | - | - | |
Cam08g2009 | 230 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cam08g2009 | 230 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 9 | 221 | IPR045103 | GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER) | |
Cam08g2009 | 230 | ProSiteProfiles | Zinc finger RING-type profile. | 30 | 71 | IPR001841 | - | |
Cam08g2009 | 230 | MobiDBLite | consensus disorder prediction | 84 | 122 | - | - | |
Cam08g2009 | 230 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 84 | IPR013083 | - | |
Cam08g2009 | 230 | SMART | ring_2 | 30 | 70 | IPR001841 | - | |
Cam08g2009 | 230 | Pfam | Zinc finger, C3HC4 type (RING finger) | 30 | 70 | IPR018957 | GO:0046872(InterPro) | |
Cam08g2009 | 230 | SUPERFAMILY | RING/U-box | 26 | 83 | - | - | |
Cam08g2009 | 230 | ProSitePatterns | Zinc finger RING-type signature. | 45 | 54 | IPR017907 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam08g2009 | Cam-Chr8:25826885 | Cam11g1835 | Cam-Chr11:30886924 | 1.00E-25 | dispersed | |
Cam10g1409 | Cam-Chr10:27750179 | Cam08g2009 | Cam-Chr8:25826885 | 1.00E-21 | transposed | |
Cam10g1724 | Cam-Chr10:31274480 | Cam08g2009 | Cam-Chr8:25826885 | 1.80E-26 | transposed | |
Cam01g1661 | Cam-Chr1:30196693 | Cam08g2009 | Cam-Chr8:25826885 | 3.20E-75 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam08g2009 | K10666 | - | csv:101221027 | 412.535 |