Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g2009 ATGGCGAGCGGGTTTGGGGAATCGACAAGTAGGCAACCTCAAAGCCCTTCTTGTTCCGACAACAATGGTGATGCCAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCCTTTGCGGTCATCTTTTCTGTTGGCCATGCCTTTATAAGTGGCTGCATATTCATTCCCATCCCCAGGAATGTCCAGTTTGCAAGGCTATCATAGAAGAGCAAAAATTGGTTCCTTTATATGGTAGGGGTAAGACATCAACTGACCCAAGATCAAAAAGTATTCCTGGAATTAATATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGTCCTCCCCCAGAACCAAATCCTTTTCCTCACAATGGTTTTGGATTCATGGGAGGTCTTGGAGGGTTTGCCCCAATGGCATCGACAAGGTTTGGCAATTTCACGTTGTCTGCGGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACTTTCCATATGGGTTTCCTAACATGTTTCATGGTAGCCATGGTCACGGCCATGGATACTATCACCAGCTCCGTCAAGGTCAGCAAGATTATTATCTGAAGCGGCTGCTTCTGTTTATTGGTTTTTGTGTTCTTCTTGCCCTAATCTGGCAATAG 693 45.17 MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANFPYGFPNMFHGSHGHGHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIWQ 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25826885 25827577 + CaPI482276_08g020090.1 Cam08g2009 134060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g2009 230 CDD RING-HC_AtRMA-like 28 72 - -
Cam08g2009 230 MobiDBLite consensus disorder prediction 1 20 - -
Cam08g2009 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 221 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER)
Cam08g2009 230 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
Cam08g2009 230 MobiDBLite consensus disorder prediction 84 122 - -
Cam08g2009 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 84 IPR013083 -
Cam08g2009 230 SMART ring_2 30 70 IPR001841 -
Cam08g2009 230 Pfam Zinc finger, C3HC4 type (RING finger) 30 70 IPR018957 GO:0046872(InterPro)
Cam08g2009 230 SUPERFAMILY RING/U-box 26 83 - -
Cam08g2009 230 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g2009 Cam-Chr8:25826885 Cam11g1835 Cam-Chr11:30886924 1.00E-25 dispersed
Cam10g1409 Cam-Chr10:27750179 Cam08g2009 Cam-Chr8:25826885 1.00E-21 transposed
Cam10g1724 Cam-Chr10:31274480 Cam08g2009 Cam-Chr8:25826885 1.80E-26 transposed
Cam01g1661 Cam-Chr1:30196693 Cam08g2009 Cam-Chr8:25826885 3.20E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g2009 K10666 - csv:101221027 412.535