Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g2020 ATGTTTTCCTCCACAACCCACCATAGCCATTGGAATAATTTCATCATGGACTACACCACCACCGCCCCACCGCCGCCGCCATTGCCAGACCTTTCCTTACACATAAGTCCACCGTCGGATTCCGGCAATCATTATTTGAAAAACCAGCAACCTCAAATCTATGGAAGCCATTTGAAGAGAGGGGCAAAAATGGGATTTGGGATTAAAAGAAGCATTAGAGCTCCAAGAATGAGATGGACTACTACTCTTCATGCCCATTTTGTCCATGCCGTTCAGCTCCTTGGCGGCCATGAAAGGGCAACACCAAAATCAGTATTGGAGCTGATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGCCATTTACAGATGTATAGAACAGTGAAAAGCACTGACAAAGCAACTGACTCAGCCATGAAGAACCAAAGGCAAGAAATTGAAGCAAGTGGTGTTTCGAATTGTGAGAATTCTAAACCACCACTTACAATGTGGAAAAGCCCCAATCAACAAATGAAATTGTTCTGTTCATCAATGGAGACAAATCAAGAGATGACGAGCAGATGGAGTCAACTTTGCAACAATAGTATTGGAAACAACCAGCAGCAGGAGAAGGACCGACACAATGGAAATGCAAATATGAAAATCTCGAGTGGTGTGAAGAAGCAGAATAATAATAATAATAATAATAATAGTAATAATAATATTAACTTAGACTTCACTTTGGGATGCCCTAATTCTCTAACAATCCATTCTAATCCTCACTCTTCATCTACTGAACTCCCTCTTCTCAAATGCTAA 801 41.07 MFSSTTHHSHWNNFIMDYTTTAPPPPPLPDLSLHISPPSDSGNHYLKNQQPQIYGSHLKRGAKMGFGIKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKATDSAMKNQRQEIEASGVSNCENSKPPLTMWKSPNQQMKLFCSSMETNQEMTSRWSQLCNNSIGNNQQQEKDRHNGNANMKISSGVKKQNNNNNNNNSNNNINLDFTLGCPNSLTIHSNPHSSSTELPLLKC 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25892384 25895380 - CaPI482276_08g020200.1 Cam08g2020 134071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g2020 266 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 44 246 IPR044847 GO:0000976(InterPro)|GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
Cam08g2020 266 MobiDBLite consensus disorder prediction 195 234 - -
Cam08g2020 266 NCBIfam myb-like DNA-binding domain, SHAQKYF class 75 128 IPR006447 GO:0003677(InterPro)
Cam08g2020 266 MobiDBLite consensus disorder prediction 146 166 - -
Cam08g2020 266 SUPERFAMILY Homeodomain-like 72 129 IPR009057 -
Cam08g2020 266 Gene3D - 74 131 - -
Cam08g2020 266 FunFam Myb family transcription factor 73 131 - -
Cam08g2020 266 Pfam Myb-like DNA-binding domain 76 127 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g2020 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g2020 Cam-Chr8:25892384 Cam09g1148 Cam-Chr9:12092861 1.70E-32 dispersed
Cam02g1846 Cam-Chr2:31513208 Cam08g2020 Cam-Chr8:25892384 2.70E-16 transposed
Cam05g2142 Cam-Chr5:29858106 Cam08g2020 Cam-Chr8:25892384 5.20E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g841 . Blo12g00936 . . . . . . Cmo05g00220 Cmo12g00449 . Cma09g00194 . Car12g00477 Sed01g2622 Cpe06g00132 Cpe07g00452 Bhi04g00296 Tan02g1912 Cmetu04g2692 . Hepe10g0690 . Lcy13g2020 Cla08g01528 Cam08g2020 Cec08g1594 Cco08g1731 Clacu08g1709 . Cre08g1490 Cone4ag1544 Cone7ag1407 Cone17ag1309 Cone20ag0163 Lsi04g01607 Csa03g04154 Chy04g00565 Cme03g01993 . Blo18g00828 . Bda01g01484 Bpe02g01679 . Bma01g00775 . . . Cmo09g00190 Cma12g00506 Cma05g00213 Car05g00175 Car09g00164 Cpe11g00176 Cpe02g00150 Bhi09g02029 . . . . Mch11g0241 . Cla05g01991 Cam05g2142 Cec05g2157 Cco05g2205 Clacu05g2133 Cmu05g2006 Cre05g2130 Lsi08g01429 Csa02g02010 Chy03g01499 Cme04g00674
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam05g0378 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 9.6e-80 293.9
Cam09g2321 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.1e-42 168.3
Cam02g1942 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.3e-40 162.2
Cam07g0221 . 4 151 G2-like Transcription Factor Family AT3G24120 54.9 2.2e-39 159.8
Cam01g2160 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Cam05g1220 . 252 452 G2-like Transcription Factor Family AT5G16560 56.5 7.9e-45 178.3
Cam09g1148 . 199 403 G2-like Transcription Factor Family AT5G16560 51.7 1.2e-40 164.5
Cam05g2142 . 1 167 G2-like Transcription Factor Family AT5G42630 58.9 6.6e-41 164.5
Cam08g2020 . 50 136 G2-like Transcription Factor Family AT5G42630 83.9 1.3e-36 150.2
Cam05g2500 . 19 256 G2-like Transcription Factor Family AT1G25550 55.8 2.4e-53 206.1
Cam08g0944 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 6.0e-52 201.4
Cam03g0128 . 1 269 G2-like Transcription Factor Family AT3G46640 51.7 2.4e-60 229.6
Cam04g0579 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.1e-74 275.0
Cam10g1619 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 6.8e-69 257.7
Cam05g0378 . 12 315 G2-like Transcription Factor Family AT4G13640 58.0 2.3e-65 246.1
Cam05g0378 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 9.6e-80 293.9
Cam09g2321 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.1e-42 168.3
Cam02g1942 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.3e-40 162.2
Cam07g0221 . 4 151 G2-like Transcription Factor Family AT3G24120 54.9 2.2e-39 159.8
Cam01g2160 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Cam11g0985 . 1 228 G2-like Transcription Factor Family AT1G69580 56.0 8.9e-50 194.5
Cam09g2321 . 1 391 G2-like Transcription Factor Family AT1G79430 53.4 1.0e-83 307.4
Cam02g1942 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 7.2e-74 274.6
Cam05g0378 . 39 203 G2-like Transcription Factor Family AT1G79430 61.2 3.4e-39 159.5
Cam01g2159 . 102 344 G2-like Transcription Factor Family AT2G01060 62.3 2.0e-56 216.1
Cam04g0579 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.2e-91 333.6
Cam10g1619 . 1 283 G2-like Transcription Factor Family AT3G10760 58.1 8.0e-83 304.3
Cam04g0579 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.4e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012530 0 1 0 0 0 1 3 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52474 PF00249 Myb_DNA-binding 1.00E-05 CL0123 Cam TF