Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g2020 ATGTTTTCCTCCACAACCCACCATAGCCATTGGAATAATTTCATCATGGACTACACCACCACCGCCCCACCGCCGCCGCCATTGCCAGACCTTTCCTTACACATAAGTCCACCGTCGGATTCCGGCAATCATTATTTGAAAAACCAGCAACCTCAAATCTATGGAAGCCATTTGAAGAGAGGGGCAAAAATGGGATTTGGGATTAAAAGAAGCATTAGAGCTCCAAGAATGAGATGGACTACTACTCTTCATGCCCATTTTGTCCATGCCGTTCAGCTCCTTGGCGGCCATGAAAGGGCAACACCAAAATCAGTATTGGAGCTGATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGCCATTTACAGATGTATAGAACAGTGAAAAGCACTGACAAAGCAACTGACTCAGCCATGAAGAACCAAAGGCAAGAAATTGAAGCAAGTGGTGTTTCGAATTGTGAGAATTCTAAACCACCACTTACAATGTGGAAAAGCCCCAATCAACAAATGAAATTGTTCTGTTCATCAATGGAGACAAATCAAGAGATGACGAGCAGATGGAGTCAACTTTGCAACAATAGTATTGGAAACAACCAGCAGCAGGAGAAGGACCGACACAATGGAAATGCAAATATGAAAATCTCGAGTGGTGTGAAGAAGCAGAATAATAATAATAATAATAATAATAGTAATAATAATATTAACTTAGACTTCACTTTGGGATGCCCTAATTCTCTAACAATCCATTCTAATCCTCACTCTTCATCTACTGAACTCCCTCTTCTCAAATGCTAA 801 41.07 MFSSTTHHSHWNNFIMDYTTTAPPPPPLPDLSLHISPPSDSGNHYLKNQQPQIYGSHLKRGAKMGFGIKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKATDSAMKNQRQEIEASGVSNCENSKPPLTMWKSPNQQMKLFCSSMETNQEMTSRWSQLCNNSIGNNQQQEKDRHNGNANMKISSGVKKQNNNNNNNNSNNNINLDFTLGCPNSLTIHSNPHSSSTELPLLKC 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25892384 25895380 - CaPI482276_08g020200.1 Cam08g2020 134071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g2020 266 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 44 246 IPR044847 GO:0000976(InterPro)|GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
Cam08g2020 266 MobiDBLite consensus disorder prediction 195 234 - -
Cam08g2020 266 NCBIfam myb-like DNA-binding domain, SHAQKYF class 75 128 IPR006447 GO:0003677(InterPro)
Cam08g2020 266 MobiDBLite consensus disorder prediction 146 166 - -
Cam08g2020 266 SUPERFAMILY Homeodomain-like 72 129 IPR009057 -
Cam08g2020 266 Gene3D - 74 131 - -
Cam08g2020 266 FunFam Myb family transcription factor 73 131 - -
Cam08g2020 266 Pfam Myb-like DNA-binding domain 76 127 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g2020 Cam-Chr8:25892384 Cam09g1148 Cam-Chr9:12092861 1.70E-32 dispersed
Cam02g1846 Cam-Chr2:31513208 Cam08g2020 Cam-Chr8:25892384 2.70E-16 transposed
Cam05g2142 Cam-Chr5:29858106 Cam08g2020 Cam-Chr8:25892384 5.20E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52474 PF00249 Myb_DNA-binding 1.00E-05 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g2020 - - - 0.0