Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam08g2020 | ATGTTTTCCTCCACAACCCACCATAGCCATTGGAATAATTTCATCATGGACTACACCACCACCGCCCCACCGCCGCCGCCATTGCCAGACCTTTCCTTACACATAAGTCCACCGTCGGATTCCGGCAATCATTATTTGAAAAACCAGCAACCTCAAATCTATGGAAGCCATTTGAAGAGAGGGGCAAAAATGGGATTTGGGATTAAAAGAAGCATTAGAGCTCCAAGAATGAGATGGACTACTACTCTTCATGCCCATTTTGTCCATGCCGTTCAGCTCCTTGGCGGCCATGAAAGGGCAACACCAAAATCAGTATTGGAGCTGATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGCCATTTACAGATGTATAGAACAGTGAAAAGCACTGACAAAGCAACTGACTCAGCCATGAAGAACCAAAGGCAAGAAATTGAAGCAAGTGGTGTTTCGAATTGTGAGAATTCTAAACCACCACTTACAATGTGGAAAAGCCCCAATCAACAAATGAAATTGTTCTGTTCATCAATGGAGACAAATCAAGAGATGACGAGCAGATGGAGTCAACTTTGCAACAATAGTATTGGAAACAACCAGCAGCAGGAGAAGGACCGACACAATGGAAATGCAAATATGAAAATCTCGAGTGGTGTGAAGAAGCAGAATAATAATAATAATAATAATAATAGTAATAATAATATTAACTTAGACTTCACTTTGGGATGCCCTAATTCTCTAACAATCCATTCTAATCCTCACTCTTCATCTACTGAACTCCCTCTTCTCAAATGCTAA | 801 | 41.07 | MFSSTTHHSHWNNFIMDYTTTAPPPPPLPDLSLHISPPSDSGNHYLKNQQPQIYGSHLKRGAKMGFGIKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKATDSAMKNQRQEIEASGVSNCENSKPPLTMWKSPNQQMKLFCSSMETNQEMTSRWSQLCNNSIGNNQQQEKDRHNGNANMKISSGVKKQNNNNNNNNSNNNINLDFTLGCPNSLTIHSNPHSSSTELPLLKC | 266 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 25892384 | 25895380 | - | CaPI482276_08g020200.1 | Cam08g2020 | 134071 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam08g2020 | 266 | PANTHER | TRANSCRIPTION FACTOR KAN2-RELATED | 44 | 246 | IPR044847 | GO:0000976(InterPro)|GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro) | |
Cam08g2020 | 266 | MobiDBLite | consensus disorder prediction | 195 | 234 | - | - | |
Cam08g2020 | 266 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 75 | 128 | IPR006447 | GO:0003677(InterPro) | |
Cam08g2020 | 266 | MobiDBLite | consensus disorder prediction | 146 | 166 | - | - | |
Cam08g2020 | 266 | SUPERFAMILY | Homeodomain-like | 72 | 129 | IPR009057 | - | |
Cam08g2020 | 266 | Gene3D | - | 74 | 131 | - | - | |
Cam08g2020 | 266 | FunFam | Myb family transcription factor | 73 | 131 | - | - | |
Cam08g2020 | 266 | Pfam | Myb-like DNA-binding domain | 76 | 127 | IPR001005 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam08g2020 | Cam-Chr8:25892384 | Cam09g1148 | Cam-Chr9:12092861 | 1.70E-32 | dispersed | |
Cam02g1846 | Cam-Chr2:31513208 | Cam08g2020 | Cam-Chr8:25892384 | 2.70E-16 | transposed | |
Cam05g2142 | Cam-Chr5:29858106 | Cam08g2020 | Cam-Chr8:25892384 | 5.20E-37 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52474 | PF00249 | Myb_DNA-binding | 1.00E-05 | CL0123 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam08g2020 | - | - | - | 0.0 |