Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g2048 ATGGGAATCTCTAACCTCTCATACGAGGAATGTCGTCGCAAAAGAGTCGAAGAAAACAAGAAGAGAATGGAAGCCCTAAATTTGCCCTTGCTTTCTCAAGCTCTCCTCGACTCTTCCCCTTCCAAGTCCTCCCCTAGTAAGCAGGTCAAGCCTCGCGTGACGCAGAAACAACTGGTGGTGGTGAGGAGGTCCAGTCGCGTAGCAAAGCAATCAGCCCCTGTTTACGCTGAAGTTCTTGTTGATCGGCTGGCGATTCCTAGAAGGATCTCCAGAGCAAGAGATTTTTCAGACCAGTTCTATGCTTCGGATGAAGCAAGAAAAAATGCCTTTGAAAGAGCTCAGGAGTTACAATCCGGATTGGAGCCGAATTATCCAATCTGTATAAAGTCGATGGTTCGGTCTCATGTTAGTGGTTGTTTCTGGCTGGGCCTTCCTGCTCATTTCTGCAAGATGCACCTTCCAAAGAATGATGGAGTAATGGCTTTAATAGATGAAGATGGTGATGAGTATCCAATAATATATTTGGCACGAAAAACAGGATTTAGTGGGGGATGGAAGGCCTTTTCAATTGCTCATAAGTTGGCAGATGGAGATGCTGTGGTTTTTCAACACATTAAACCTACAGCCTGCAAGGTCTACATCTTCAGGGCGGATGGTTCTAAAGAGGACAGTGATTCTAACAGTAGCTAA 690 45.51 MGISNLSYEECRRKRVEENKKRMEALNLPLLSQALLDSSPSKSSPSKQVKPRVTQKQLVVVRRSSRVAKQSAPVYAEVLVDRLAIPRRISRARDFSDQFYASDEARKNAFERAQELQSGLEPNYPICIKSMVRSHVSGCFWLGLPAHFCKMHLPKNDGVMALIDEDGDEYPIIYLARKTGFSGGWKAFSIAHKLADGDAVVFQHIKPTACKVYIFRADGSKEDSDSNSS 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26071172 26072908 + CaPI482276_08g020480.1 Cam08g2048 134099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g2048 229 Gene3D - 101 219 IPR015300 -
Cam08g2048 229 SMART B3_2 127 218 IPR003340 GO:0003677(InterPro)
Cam08g2048 229 ProSiteProfiles B3 DNA-binding domain profile. 127 218 IPR003340 GO:0003677(InterPro)
Cam08g2048 229 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 12 219 IPR044837 -
Cam08g2048 229 CDD B3_DNA 125 216 IPR003340 GO:0003677(InterPro)
Cam08g2048 229 Pfam B3 DNA binding domain 128 217 IPR003340 GO:0003677(InterPro)
Cam08g2048 229 SUPERFAMILY DNA-binding pseudobarrel domain 121 219 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g2048 Cam-Chr8:26071172 Cam08g2049 Cam-Chr8:26076870 3.60E-103 tandem
Cam02g0623 Cam-Chr2:7155975 Cam08g2048 Cam-Chr8:26071172 2.20E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52478 PF02362 B3 6.00E-12 CL0405 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g2048 - - - 0.0