Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g2049 ATGGGGATCGCAAACCTCTCATATGAGGAATGTCGTCGCAAGAGACTCGAAGAAAACAAGAAGCGAATGGAAGCCCTAAATTTGCCCTTGCTTTCTCAAGCTCTCCTCGATTCTTCCCCTTCCAAGTCCTCACCTAGTAAGCTCACCAAGCCTCGCGTGACTCAGAAACAACTCGTGGTGGTGAGGAGGTCCAGTCGCGTAGCGAAACAGTCAGCCCCTGTTTACGCCGAAGTTGTTGTAAATCGCGTGGTGATTCCTAGAAGGATCTCTAAAGCTAGAGATTTTTCAAATCGGGTTTATGCTTCGGATGAAGCAAGAAAAAATGCTTTTGAAAGAGCTGAGCAACTACAATCTGGGTTGGATCCGAATTATCCCAACTTTATAAAGTCAATGCTGCAGTCTCATGTTAGTGGTGGATTTTGGCTGGGCCTTCCTTCTCATTTCTGCAAGATCCATCTTCCAAATCGTGATGGAGTCATGACTTTAATAGATGAAGATGGCGATGAGTATCCGACTATATATTTAGCACGAAAAACAGGACTTAGTGGCGGATGGAAGGGTTTTTCAGTTGCTCATAAGTTGGCAGATGGGGATGCTGTAGTTTTTCAATTCATTAAACCTACAAGATGCAAGGTGTACATTCTTAGGGCGAATAGTTCCAGACAAGATAGCGATTCTAACAGTAGCCAAATGATTGACATTTCTTTTCCTAGCTCAGGTAAGAGGTAG 729 44.03 MGIANLSYEECRRKRLEENKKRMEALNLPLLSQALLDSSPSKSSPSKLTKPRVTQKQLVVVRRSSRVAKQSAPVYAEVVVNRVVIPRRISKARDFSNRVYASDEARKNAFERAEQLQSGLDPNYPNFIKSMLQSHVSGGFWLGLPSHFCKIHLPNRDGVMTLIDEDGDEYPTIYLARKTGLSGGWKGFSVAHKLADGDAVVFQFIKPTRCKVYILRANSSRQDSDSNSSQMIDISFPSSGKR 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26076870 26078997 + CaPI482276_08g020490.1 Cam08g2049 134100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g2049 242 Coils Coil 6 26 - -
Cam08g2049 242 Pfam B3 DNA binding domain 127 217 IPR003340 GO:0003677(InterPro)
Cam08g2049 242 Gene3D - 101 219 IPR015300 -
Cam08g2049 242 ProSiteProfiles B3 DNA-binding domain profile. 127 218 IPR003340 GO:0003677(InterPro)
Cam08g2049 242 SMART B3_2 127 218 IPR003340 GO:0003677(InterPro)
Cam08g2049 242 CDD B3_DNA 125 216 IPR003340 GO:0003677(InterPro)
Cam08g2049 242 MobiDBLite consensus disorder prediction 221 242 - -
Cam08g2049 242 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 12 219 IPR044837 -
Cam08g2049 242 SUPERFAMILY DNA-binding pseudobarrel domain 120 218 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1328 Cam-Chr2:25866607 Cam08g2049 Cam-Chr8:26076870 5.10E-30 dispersed
Cam05g1160 Cam-Chr5:10820580 Cam08g2049 Cam-Chr8:26076870 2.50E-33 dispersed
Cam08g2048 Cam-Chr8:26071172 Cam08g2049 Cam-Chr8:26076870 3.60E-103 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52479 PF02362 B3 5.50E-13 CL0405 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g2049 - - - 0.0