Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g2069 ATGGACGGTGCTGATGGGACTGTGAGGCTTGGGGCAGTGAACTTGAAGCCGGATCGGAGCGCCTTTGATTTAGGCCCCGATGTGTCTGTTTCGTCTCCGGTCACAAGGCAGAAAGCCGCTGCTGCTAAACAGTTCATAGAGAATCATTACAAGAACTATCTCCAAGGTCTTCAGGATCGCAAAGACAGACGAAGAACTCTTCAACGAAGAGCGCAAGAAGCTCAGATGTCGGCTGAAGAACAAGAAGAGATGCTGAGGAACTTGGAACGCAGAGAAACAGAATTTATGAGACTGCAAAGACGTAAAGTTGGAATCGATGACTTTGAGCAATTAACAGTTATTGGTAAAGGTGCATTCGGCGAGGTTAGATTGTGTCGTGCAAAAGGAACTGGGGAAATTTTTGCCATGAAGAAGCTGAAGAAATCAGAGATGCTTAGCCGTGGGCAGGTTGAGCATGTTCGATCTGAGAGGAATTTACTTGCAGAGGTTGATAGTCGGTGCATTGTAAAACTCTTTTATTCTTTTCAAGATTCTGAATTCTTATACCTTATTATGGAGTATTTACCTGGTGGTGACATTATGACATTGCTAATGAGAGAAGACATTCTGTCAGAGGATGTTGCTCGATTTTACATAGCAGAGAGCATTTTAGCTATTCATTCAATTCATCAGCACAATTATATACATAGGGATATAAAACCAGATAACCTGATACTAGATAAAAATGGCCATCTGAAGCTTTCAGATTTTGGCTTGTGCAAGCCTCTGGATGACAAGTATTCAAGTATACTTTTGAATGAGCAAGACCTAACTGCCCAGCAGGCCAAAAATGAAGGTCAAGGTCATGCTGACTCTAATGGATCCCATTGGATGATGCCAAAAGAACAAATTCAACAGTGGAAGCGTAATCGCCGTGCATTGGCCTTTTCAACTGTTGGGACCCTGGATTATATGGCACCTGAAGTACTGCTTAAGAAAGGGTATGGAATGGAGTGTGATTGGTGGTCATTAGGGGCCATTATGTATGAGATGCTGGCTGGTTATCCTCCTTTTTGTTCTGATGATCCAAGGATGACTTTTCGCAAGATAATAAATTGGAGAACTTGCCTGAAATTTCCCGAGGAACCAAGAATTTCAGAGGAAGCTAAGGACCTGATCAGCCACTTGCTTTGTGATGTTGAAACAAGGTTGGGAACACGAGGAGTAGAAGAAATAAAGGCACATCCATGGTTCAAAGGCATTCAATGGGATAAGCTGTATGAAATGGAAGCTGCATACAAACCAACTGTTACTGGAGAACTAGACACTCAGAACTTTGAGAAGTTTCCTGAAGTTCAAGACCCTCCCTCTGAAATGCCAACTGTTGGACCTTGGAGGAAGATGCTAACTTCAAAAGATACCAATTTCATTGGATTTACTTTTAAGAAGTCAAACGTCAAATCACTTGAGAGTACAGGTACAGATGTGCATTCAAACACATCATCAAAATCACCATCTCTAGTTTCCTTGTTGGGTCGAATAGACTTGCAAGAAACAGTGATACCAGAAGTTGAACAAAAGCAGGAAGCATAA 1572 42.11 MDGADGTVRLGAVNLKPDRSAFDLGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKDRRRTLQRRAQEAQMSAEEQEEMLRNLERRETEFMRLQRRKVGIDDFEQLTVIGKGAFGEVRLCRAKGTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLFYSFQDSEFLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESILAIHSIHQHNYIHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSSILLNEQDLTAQQAKNEGQGHADSNGSHWMMPKEQIQQWKRNRRALAFSTVGTLDYMAPEVLLKKGYGMECDWWSLGAIMYEMLAGYPPFCSDDPRMTFRKIINWRTCLKFPEEPRISEEAKDLISHLLCDVETRLGTRGVEEIKAHPWFKGIQWDKLYEMEAAYKPTVTGELDTQNFEKFPEVQDPPSEMPTVGPWRKMLTSKDTNFIGFTFKKSNVKSLESTGTDVHSNTSSKSPSLVSLLGRIDLQETVIPEVEQKQEA 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26225090 26229767 - CaPI482276_08g020690.1 Cam08g2069 134120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g2069 523 Gene3D Phosphorylase Kinase; domain 1 77 191 - -
Cam08g2069 523 PANTHER SERINE/THREONINE-PROTEIN KINASE 41 478 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Cam08g2069 523 FunFam Non-specific serine/threonine protein kinase 310 429 - -
Cam08g2069 523 Pfam Protein kinase C terminal domain 430 474 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g2069 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam08g2069 523 Gene3D Phosphorylase Kinase; domain 1 430 441 - -
Cam08g2069 523 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524(InterPro)
Cam08g2069 523 Gene3D Transferase(Phosphotransferase) domain 1 192 259 - -
Cam08g2069 523 ProSiteProfiles AGC-kinase C-terminal domain profile. 412 484 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g2069 523 SMART serkin_6 108 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g2069 523 ProSiteProfiles Protein kinase domain profile. 108 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g2069 523 FunFam Non-specific serine/threonine protein kinase 79 191 - -
Cam08g2069 523 Coils Coil 57 101 - -
Cam08g2069 523 CDD STKc_NDR_like 106 475 - -
Cam08g2069 523 Pfam Protein kinase domain 308 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g2069 523 Pfam Protein kinase domain 108 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g2069 523 SUPERFAMILY Protein kinase-like (PK-like) 85 463 IPR011009 -
Cam08g2069 523 Gene3D Transferase(Phosphotransferase) domain 1 309 429 - -
Cam08g2069 523 CDD MobB_NDR_LATS-like 42 103 - -
Cam08g2069 523 FunFam Non-specific serine/threonine protein kinase 192 259 - -
Cam08g2069 523 SMART pkinase_C_6 412 476 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1554 Cam-Chr3:30477118 Cam08g2069 Cam-Chr8:26225090 4.50E-166 dispersed
Cam06g1807 Cam-Chr6:29158078 Cam08g2069 Cam-Chr8:26225090 1.10E-56 dispersed
Cam08g2069 Cam-Chr8:26225090 Cam09g0779 Cam-Chr9:7915457 8.90E-174 dispersed
Cam08g2069 Cam-Chr8:26225090 Cam05g1974 Cam-Chr5:28605096 1.60E-167 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85394 PF00069 Pkinase 1.10E-64 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g2069 K08790 - csv:101222805 1005.36