Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g2075 ATGGATATGGCGGACGCGGAGCATGCAAGTAAGTGGGGAAGAGATGAGATGGATATTGTGAGTGTGATTGAGCAGATGGGAAAATTTGGAGAGAATTTAGAATATAATGAAGTGGCAGCTTCTTCTTCGGATTTTGCTTTTGGTAGTCCCAATATTGGTGTAACTGTAACTACTTCCACTTCACCTCCCATTTTTCCTTCTTTTAATAATCTCCCACCATCCACCGCCCTTTCAATCAGTAACGCCACTGCACCACCGCCTTTTCCACCCTATTCCGCCGCTGCCCGCTCCAGATACCATCTTCCTGCCACCCCAATTTCTGGCATGAAGGGAGAGGGGAAGGAATCAGAGTCAATGGGAGCGATGAGGGAGATGATATACAGAATAGCAGCGATGCAGCCAATAGAGATAGACCCAGAAGCGGTGAAACCACCAAAGCGTCGGAATGTTAAAATTTCAAAAGATCCTCAGAGTGTAGCGGCCAGGCTTAGAAGAGAGAGAATAAGCGAAAGAATTAGAATTCTTCAAAGAATTGTCCCCGGCGGCACCAAAATGGACACCGCCTCCATGTTAGACGAGGCCATTCATTACCTCAAGTTCTTGAAAAACCAACTTCATTCACTCCAAATTGCCGCCGCCGCCGCCTACCCCTTTCCCACCGCCATCTTCTCTGCTGGGACTACTAATTATAATAAAAAACATCACTACCTGGAGGATGCTTCATTTTAA 729 46.5 MDMADAEHASKWGRDEMDIVSVIEQMGKFGENLEYNEVAASSSDFAFGSPNIGVTVTTSTSPPIFPSFNNLPPSTALSISNATAPPPFPPYSAAARSRYHLPATPISGMKGEGKESESMGAMREMIYRIAAMQPIEIDPEAVKPPKRRNVKISKDPQSVAARLRRERISERIRILQRIVPGGTKMDTASMLDEAIHYLKFLKNQLHSLQIAAAAAYPFPTAIFSAGTTNYNKKHHYLEDASF 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26298396 26299491 - CaPI482276_08g020750.1 Cam08g2075 134126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g2075 242 FunFam BHLH transcription factor 155 218 - -
Cam08g2075 242 Pfam Helix-loop-helix DNA-binding domain 161 202 IPR011598 GO:0046983(InterPro)
Cam08g2075 242 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 90 220 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g2075 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 211 IPR036638 GO:0046983(InterPro)
Cam08g2075 242 Gene3D - 148 211 IPR036638 GO:0046983(InterPro)
Cam08g2075 242 SMART finulus 158 207 IPR011598 GO:0046983(InterPro)
Cam08g2075 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1322 Cam-Chr2:25777739 Cam08g2075 Cam-Chr8:26298396 4.70E-38 dispersed
Cam07g1215 Cam-Chr7:26524989 Cam08g2075 Cam-Chr8:26298396 9.10E-23 dispersed
Cam08g2075 Cam-Chr8:26298396 Cam09g0035 Cam-Chr9:1317160 4.80E-29 dispersed
Cam08g2075 Cam-Chr8:26298396 Cam08g2080 Cam-Chr8:26350855 8.70E-07 proximal
Cam01g1591 Cam-Chr1:29395786 Cam08g2075 Cam-Chr8:26298396 1.30E-36 transposed
Cam05g2201 Cam-Chr5:30350332 Cam08g2075 Cam-Chr8:26298396 2.00E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52481 PF00010 HLH 1.50E-06 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g2075 - - - 0.0