Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam08g2078 | ATGTCCAAGAATTCTGCTGTTGAAGCTCGTGAAGGAATCTCTGGTGTTGTGAATTGTCTGTTATCGTCTCTTGGTCTTCTCATATTCATTTCTAGATCAAGACTACAGGAAGAAGTAGCCATGGCTGATCAGGTTCAACATCCCACCATCTACCAGAAGGTTGCTGGTCAGCTCTCCCTTCAGTCGAGGGTTGCTTCGGGTTTCCGTTCTTGTGATGATGGCTTTAGGAACCCTGCACTTTATCAGAGGCGTGCATCAATCAGCAATCATACAAATGCTGCTTTTCAGTATCCTGCTGTGCAATCCTGTGTTGCTACTACTGATCTTTCTAGGGTTGCCTCAACTGCCTCCCCCATTTTTGTTGCTGCCCCTGCTGAGAAAGGAAACTTTATGATCGACTTTCTTATGGGTGGTGTGTCTGCTGCTGTGTCCAAGACAGCTGCTGCCCCGATTGAGCGTGTCAAGCTCTTGATTCAAAATCAGGATGAGATGATTAAATCTGGACGTTTGTCTGAGCCATACAAGGGTATTGGCGATTGTTTCAAGCGCACAATCCAGGAAGAGGGTTTCGGTTCATTGTGGAGAGGAAACACTGCCAATGTCATCCGTTATTTCCCCACTCAAGCATTGAACTTCGCTTTCAAGGATTACTTCAAGAGGCTTTTCAACTTCAAGAAAGACAGGGATGGTTACTGGAAATGGTTTGCTGGTAACCTGGCATCCGGTGGTGCTGCTGGTGCTTCATCCCTTCTTTTTGTTTACTCTCTTGACTATGCCCGTACCCGATTAGCAAACGACGCCAAAGCTGCCAAGAAAGGTGGAGAAAGGCAATTCAATGGACTGGTTGATGTCTACAGGAAGACATTGCAGTCTGATGGTATTGCTGGTCTTTACCGTGGATTTAACATCTCTTGTGTTGGTATCATCGTGTACCGTGGTTTATACTTTGGAATGTATGATTCTCTCAAGCCTGTTTTGTTGACCGGGAAGATGCAGGATAGCTTCTTCGCTAGTTTTGCCTTGGGTTGGCTCATCACCAATGGTGCTGGTCTCGCATCCTACCCAATTGACACTGTTCGTAGAAGAATGATGATGACATCAGGTGAAGCAGTGAAGTACAAGAGCTCATTGGATGCCTTCTCTCAGATCTTGAAGAACGAAGGTGCCAAGTCTCTCTTTAAGGGTGCTGGTGCAAACATTCTCCGTGCCGTTGCTGGTGCTGGTGTGCTTGCCGGTTATGATAAGTTGCAGCCGCGGCAGACTCCTCCCAAATTCTCTCGCGGCCATCAGTTTCTCCCAAGGGAAGAAGTAGCCATGGCTGATCAGGTTCAACATCCCACCATCTACCAGAAGGTTGCTGGTCAGCTCTCCCTTCAGTCGAGGGTTGCTTCGGGTTTCCGTTCTTGTGATGATGGCTTTAGGAACCCTGCACTTTATCAGAGGCGTGCATCAATCAGCAATCATACAAATGCTGCTTTTCAGTATCCTGCTGTGCAATCCTGTGTTGCTACTACTGATCTTTCTAGGGTTGCCTCAACTGCCTCCCCCATTTTTGTTGCTGCCCCTGCTGAGAAAGGAAACTTTATGATCGACTTTCTTATGGGTGGTGTGTCTGCTGCTGTGTCCAAGACAGCTGCTGCCCCGATTGAGCGTGTCAAGCTCTTGATTCAAAATCAGGATGAGATGATTAAATCTGGACGTTTGTCTGAGCCATACAAGGGTATTGGCGATTGTTTCAAGCGCACAATCCAGGAAGAGGGTTTCGGTTCATTGTGGAGAGGAAACACTGCCAATGTCATCCGTTATTTCCCCACTCAAGCATTGAACTTCGCTTTCAAGGATTACTTCAAGAGGCTTTTCAACTTCAAGAAAGACAGGGATGGTTACTGGAAATGGTTTGCTGGTAACCTGGCATCCGGTGGTGCTGCTGGTGCTTCATCCCTTCTTTTTGTTTACTCTCTTGACTATGCCCGTACCCGATTAGCAAACGACGCCAAAGCTGCCAAGAAAGGTGGAGAAAGGCAATTCAATGGACTGGTTGATGTCTACAGGAAGACATTGCAGTCTGATGGTATTGCTGGTCTTTACCGTGGATTTAACATCTCTTGTGTTGGTATCATCGTGTACCGTGGTTTATACTTTGGAATGTATGATTCTCTCAAGCCTGTTTTGTTGACCGGGAAGATGCAGGATAGCTTCTTCGCTAGTTTTGCCTTGGGTTGGCTCATCACCAATGGTGCTGGTCTCGCATCCTACCCAATTGACACTGTTCGTAGAAGAATGATGATGACATCAGGTGAAGCAGTGAAGTACAAGAGCTCATTGGATGCCTTCTCTCAGATCTTGAAGAACGAAGGTGCCAAGTCTCTCTTCAAGGGTGCTGGTGCTAACATTCTCCGTGCCGTTGCTGGTGCTGGTGTGCTTGCCGGTTACGATAAGTTGCAGGTGATCGTCTTTGGGAAGAAATATGGATCTGGTGGTGCCTAA | 2487 | 47.08 | MSKNSAVEAREGISGVVNCLLSSLGLLIFISRSRLQEEVAMADQVQHPTIYQKVAGQLSLQSRVASGFRSCDDGFRNPALYQRRASISNHTNAAFQYPAVQSCVATTDLSRVASTASPIFVAAPAEKGNFMIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTIQEEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLQSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGKMQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQPRQTPPKFSRGHQFLPREEVAMADQVQHPTIYQKVAGQLSLQSRVASGFRSCDDGFRNPALYQRRASISNHTNAAFQYPAVQSCVATTDLSRVASTASPIFVAAPAEKGNFMIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTIQEEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLQSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGKMQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVIVFGKKYGSGGA | 828 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 26336298 | 26345418 | + | CaPI482276_08g020780.1 | Cam08g2078 | 134129 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam08g2078 | 828 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 631 | 723 | IPR018108 | - | |
| Cam08g2078 | 828 | SUPERFAMILY | Mitochondrial carrier | 526 | 813 | IPR023395 | - | |
| Cam08g2078 | 828 | FunFam | ADP,ATP carrier protein, mitochondrial | 529 | 824 | - | - | |
| Cam08g2078 | 828 | SUPERFAMILY | Mitochondrial carrier | 128 | 415 | IPR023395 | - | |
| Cam08g2078 | 828 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 731 | 817 | IPR018108 | - | |
| Cam08g2078 | 828 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 526 | 619 | IPR018108 | - | |
| Cam08g2078 | 828 | PANTHER | ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED | 524 | 825 | IPR002113 | GO:0005471(InterPro)|GO:0005471(PANTHER)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| Cam08g2078 | 828 | Gene3D | Mitochondrial carrier domain | 131 | 420 | IPR023395 | - | |
| Cam08g2078 | 828 | Gene3D | Mitochondrial carrier domain | 529 | 824 | IPR023395 | - | |
| Cam08g2078 | 828 | Pfam | Mitochondrial carrier protein | 631 | 725 | IPR018108 | - | |
| Cam08g2078 | 828 | Pfam | Mitochondrial carrier protein | 731 | 819 | IPR018108 | - | |
| Cam08g2078 | 828 | Pfam | Mitochondrial carrier protein | 526 | 623 | IPR018108 | - | |
| Cam08g2078 | 828 | Pfam | Mitochondrial carrier protein | 333 | 416 | IPR018108 | - | |
| Cam08g2078 | 828 | Pfam | Mitochondrial carrier protein | 233 | 327 | IPR018108 | - | |
| Cam08g2078 | 828 | Pfam | Mitochondrial carrier protein | 128 | 225 | IPR018108 | - | |
| Cam08g2078 | 828 | PRINTS | Adenine nucleotide translocator signature | 338 | 354 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| Cam08g2078 | 828 | PRINTS | Adenine nucleotide translocator signature | 233 | 246 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| Cam08g2078 | 828 | PRINTS | Adenine nucleotide translocator signature | 130 | 142 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| Cam08g2078 | 828 | PRINTS | Adenine nucleotide translocator signature | 207 | 219 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| Cam08g2078 | 828 | PRINTS | Adenine nucleotide translocator signature | 174 | 195 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| Cam08g2078 | 828 | PRINTS | Mitochondrial carrier protein signature | 146 | 160 | IPR002067 | GO:0055085(InterPro) | |
| Cam08g2078 | 828 | PRINTS | Mitochondrial carrier protein signature | 248 | 266 | IPR002067 | GO:0055085(InterPro) | |
| Cam08g2078 | 828 | PRINTS | Mitochondrial carrier protein signature | 133 | 146 | IPR002067 | GO:0055085(InterPro) | |
| Cam08g2078 | 828 | PRINTS | Mitochondrial carrier protein signature | 298 | 316 | IPR002067 | GO:0055085(InterPro) | |
| Cam08g2078 | 828 | PRINTS | Mitochondrial carrier protein signature | 342 | 364 | IPR002067 | GO:0055085(InterPro) | |
| Cam08g2078 | 828 | PRINTS | Mitochondrial carrier protein signature | 196 | 216 | IPR002067 | GO:0055085(InterPro) | |
| Cam08g2078 | 828 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 333 | 419 | IPR018108 | - | |
| Cam08g2078 | 828 | FunFam | ADP,ATP carrier protein, mitochondrial | 131 | 425 | - | - | |
| Cam08g2078 | 828 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 233 | 325 | IPR018108 | - | |
| Cam08g2078 | 828 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 128 | 221 | IPR018108 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam04g1190 | Cam-Chr4:25984541 | Cam08g2078 | Cam-Chr8:26336298 | 4.60E-109 | dispersed | |
| Cam07g0244 | Cam-Chr7:3574386 | Cam08g2078 | Cam-Chr8:26336298 | 1.70E-161 | dispersed | |
| Cam08g2078 | Cam-Chr8:26336298 | Cam08g2178 | Cam-Chr8:27161520 | 7.30E-53 | dispersed | |
| Cam08g2078 | Cam-Chr8:26336298 | Cam08g2182 | Cam-Chr8:27184386 | 3.30E-29 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam08g2078 | K05863 | - | csv:101203733 | 740.725 |