Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g2079 ATGTCTAATTATGCTTTCTTGAATGACCAGCTCTCGAAGCGGACCTCCATTTTCGGTTTGCGCTTGTGGGTTGTTTTGGGTATTTGCGTTGGTGCCGCCATTGTTATCGTTCTGTTCCTCATTTCGTTATGGTTCACTTCCAGGCGCAACAGTTCCAATAAATCTAAACCCTCTCTGAACCCCACTATCCCAAATGTGTCTAAGGAAATCCAGGAAATACGAATCGATCATTCTCGGAATCCAACTCATTCTGACTCTAAAGTTCAATTAGCTTCTAACCCTGAGCCTTTGCCGGAGGCAGAGCCTTTAGCAACGCTGCTTCAGACGGAAGAAGGGAGCCCACCTAGTGGTCGCCATAGAATTCACATTGAAATTGGGAAGGACCACCGGATTTCGTACCCGGAGAGAGGTGGCGGTTCGTCTCACGGTAGCGGAGAGGCTAGGTCTGGTGATCAGGCGCCAATGGCTGTGCCGGAGGTTTCGCATTTGGGTTGGGGACATTGGTACACTCTCAGAGAGCTTGAGTATGCTACTAATAGTTTTGCGGATGAGAATGTAATTGGTGAGGGCGGATATGGTATTGTGTACCGTGGCGTTATGGAGGACAACACTGTGGTTGCTATCAAAAATTTGCTCAATAACAGAGGACAGGCTGAGAAGGAGTTTAAAGTTGAAGTAGAAGCAATTGGACGCGTACGCCACAAGAATCTGGTGCGTTTGCTCGGCTACTGTGCTGAAGGAGCTCATAGGATACTTGTCTATGAGTACATTGATAACGGAAACTTGGAACAGTGGCTTCATGGAGAAGTTGGACCTTGTAGCCCTCTCACATGGGACATTCGAATGAATATAATTGTTGGAACAGCAAAAGGGTTAACATACCTCCATGAGGGGCTCGAGCCTAAGGTTGTTCACCGTGATATCAAGTCAAGTAACATTTTGCTTGACAAGCAGTGGAATCCAAAGGTCTCTGACTTCGGGCTAGCAAAGCTTCTAGGCTCAGAGAGGAGTTATGTAACAACTCGGGTGATGGGAACTTTTGGATATGTAGCTCCAGAATATGCAAGTACTGGCATGTTAAATGAAAAAAGTGATGTATATAGTTTCGGTATCCTCATCATGGAGATAATTTCAGGGAGAAATCCAGTAGATTATAGCCGCCCTTCAGGAGAGGTCAACCTAGTTGAGTGGCTTAAAACAATGGTAAGTAATCGAAATGCAGAGGGAGTTCTGGATCCTAAGTTGCCTGAGAAGCCTTCAACAAGGGCACTGAAGCGTGCTCTGTTAGTAGCTTTACGCTGTGTGGATCCTAATGTTCAGAAGAGGCCTAAAATGGGGCATGTAATTCATATGCTTGAAGCTGACGAGTTTCCTTTCCGAGATGATCGTAGAGTGGGACGAGAACCAGGACGATCACTACTGAAGGAAAAGCTCATGGAAAGGCTTGTGAGTGAATCTGGAGAGAGCAGTGGATATGAAAGTGGAGCAACCCAAGCAAGCCGACATCTACGGAGAAAGCAAGAACTTGAAGAACAACAGCCTCGCGAACCTCACACTTTAAGGTGA 1566 46.3 MSNYAFLNDQLSKRTSIFGLRLWVVLGICVGAAIVIVLFLISLWFTSRRNSSNKSKPSLNPTIPNVSKEIQEIRIDHSRNPTHSDSKVQLASNPEPLPEAEPLATLLQTEEGSPPSGRHRIHIEIGKDHRISYPERGGGSSHGSGEARSGDQAPMAVPEVSHLGWGHWYTLRELEYATNSFADENVIGEGGYGIVYRGVMEDNTVVAIKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRILVYEYIDNGNLEQWLHGEVGPCSPLTWDIRMNIIVGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNEKSDVYSFGILIMEIISGRNPVDYSRPSGEVNLVEWLKTMVSNRNAEGVLDPKLPEKPSTRALKRALLVALRCVDPNVQKRPKMGHVIHMLEADEFPFRDDRRVGREPGRSLLKEKLMERLVSESGESSGYESGATQASRHLRRKQELEEQQPREPHTLR 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26348287 26350675 - CaPI482276_08g020790.1 Cam08g2079 134130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g2079 521 MobiDBLite consensus disorder prediction 499 521 - -
Cam08g2079 521 PANTHER OS01G0323000 PROTEIN 6 488 IPR052232 -
Cam08g2079 521 MobiDBLite consensus disorder prediction 125 154 - -
Cam08g2079 521 MobiDBLite consensus disorder prediction 476 521 - -
Cam08g2079 521 FunFam Putative receptor-like serine/threonine-protein kinase 257 467 - -
Cam08g2079 521 CDD STKc_IRAK 187 453 - -
Cam08g2079 521 Pfam Protein kinase domain 183 450 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g2079 521 ProSiteProfiles Protein kinase domain profile. 181 439 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g2079 521 ProSitePatterns Protein kinases ATP-binding region signature. 187 209 IPR017441 GO:0005524(InterPro)
Cam08g2079 521 Gene3D Transferase(Phosphotransferase) domain 1 257 463 - -
Cam08g2079 521 FunFam Probable serine/threonine-protein kinase At1g01540 161 256 - -
Cam08g2079 521 SMART serkin_6 181 459 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g2079 521 SUPERFAMILY Protein kinase-like (PK-like) 162 453 IPR011009 -
Cam08g2079 521 Gene3D Phosphorylase Kinase; domain 1 155 256 - -
Cam08g2079 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 303 315 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0543 Cam-Chr2:6202243 Cam08g2079 Cam-Chr8:26348287 6.90E-141 dispersed
Cam05g0162 Cam-Chr5:1791345 Cam08g2079 Cam-Chr8:26348287 5.00E-170 dispersed
Cam05g0999 Cam-Chr5:9058338 Cam08g2079 Cam-Chr8:26348287 4.20E-73 dispersed
Cam08g2079 Cam-Chr8:26348287 Cam09g2283 Cam-Chr9:37299108 1.30E-145 dispersed
Cam01g1736 Cam-Chr1:30948296 Cam08g2079 Cam-Chr8:26348287 1.00E-198 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85395 PF00069 Pkinase 2.50E-47 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g2079 - - - 0.0