Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g2081 ATGCAAGGGCAAAGGAGTAGTGTTGGTTCTTTGTCAGAAACAATAAACTTTGAACATGGATCTTCATCAAATAATCCTGGTAACCAACCAGTTTACTGGAATAACATGTGGAATCCAGCAGAAAATCGAATACCAGATTATTTATTACCTACTTCTGATATAAATTCTGGATATGTAAGCTCTGTGAGCCATGAACAACGAAGTTTGAGCAGATGGAGCTTGGGTGAACCTAGCTCTTGTGATATGCAAACCGAGGTTCTGCCTGATGAGCAGAAAGCTGAAATTGGATGGTCTTCACTGACTCGTGATGCAGATGGTCCTGTTACCGAAAACCGACTCTGTGAGCCATCAAATAATCCGTCACTGGGTCATGTGAACTTGAGCCCACTGATTATACAAAATTCTAATTCTAACTCTAATGCTATTCCTCATAATCTCAACTTAAATGCAAGTTTTGCTAGTCATGGAGGCGACAATAGCAGAGTTAATGAAGGTACTAATGTATATAAATCTAGTGGATCAGAAGAAGGGAGGATTTTGTGTTCTAGTGCATCTGATCCTCTTTTACTTCCTTCTGGAAATAGTGGACTTCCAGTGGTTACAAATGACGGTAGAGCAGGCTCTTCCTTGGATGGGCGTCGTGCACCCTGCAAAAGAAAATCTATTGAAGGAAATGTTGCACAGTCCTCTTTAAGTGGAAGCAGTAACTACTCGCAGCATATTGAAAGTGGCTCGGAGCCCCATCTTCCAGTGTTCCCTGGTCGCTACAACACAGGCAGTAGGTTGAGCATACCTCCTCCACCAGCACGAATGAATCAGGCCCCTGTACGAGGTGCAGGTGAACTGACTTCCAACAGCTTCTCTGAGTCAATTGTTGCGGAAAGCTCAGACAGTTCTCATAGAAACTATCGTGTAAGGATTAGTTCATCAAATGCTCAAGATTCTTTTGCATCAGCAGGAACTGCTGTTAGGCATCCTGGGCCACCATCTTCCCAGCTGCCAGCAAGACTTCTACCTGCTGAGCATGTATTAGACTTGAGGCCAGCACCAGCTGTAGACAATGTATCAGCTCAAGGTCAGCCAATTATGATACATGTGCCTGCTTTACCTCGAAGTCTGCAACCATATAGGTGGAATGGGAGCTCTACTTCAAGAAGCAGTTCATCAAGCTCTGCAGGAGAGAGGCAGGTGGTGCAACGTGAAGAGGTGAGACCAAGCAACATGGGAAGAACCGTATCCGAACATCCTATGTTTGTCCCGGCAAATGAGCTGAGGAGTTTGGTTCGAAGTCCATCAAGTAGAGCTTTAGCATCTTCGAACTTGTCCATTCCTGGAAATGTTGCTTCTACATCCAGGGTTGGTACAAGTTCAGGGGTCCATCCCTCTTCTGGACCTTGGATTCCTCCTGAGAATTCTCCAACACAGTTTCCCAGGAGGTTAACAGAATATGTTCGTAGGCAGCTATTTGCTTCTGCTACAAATGAGTCTGGAGGAAGGACAAATAATTATTCACAGCGATCAGGTTCTACTTCTGCCCAGGATATGGTTCTTTCATCTGGATCTGGCCGCCGGGGACACCATTTATTGCAACCAAGGTCTGCATTATGGATGGAAAGAAGAGGTGATGGTGGACTTGGTCTTCCCTATTCATTACGAACTTTGGCTACTTCCGGTGAAGGAAGTGACAATAACAGACTTGTATCTGAGCACATTCGCAATGTCTTGGGCCTTGTTCGCAGGGGTGAAAGCTTACGAGTTGAGGATGTGATGATCCTGGACCAGTCACTATTTTTCGGGATGGCTGATATTTATGATAGGCACAGGGATATGCGTCTCGACGTTGATAACATGTCGTATGAGGAATTGTTGGCTTTGGAAGAGCGTATTGGGAATGTCAACACAGGACTAAGTGAAGAGACAATAGTTGCTCGACTGAAACAAAAGAAGCGGGTGAATGCTGTTGACTCACAGGTGGAGGAAGAACCATGCTGTGTTTGTCAGGAGGAATACGTCGAAGGAGAAGACATTGGAACGCTGGAATGCGGGCATGACTTCCACACAGCTTGTATTAAGCAGTGGCTGATGCAAAAGAATCTGTGCCCCATATGCAAAACAACTGGTTTGGCAAGCCGAGAATGA 2139 45.25 MQGQRSSVGSLSETINFEHGSSSNNPGNQPVYWNNMWNPAENRIPDYLLPTSDINSGYVSSVSHEQRSLSRWSLGEPSSCDMQTEVLPDEQKAEIGWSSLTRDADGPVTENRLCEPSNNPSLGHVNLSPLIIQNSNSNSNAIPHNLNLNASFASHGGDNSRVNEGTNVYKSSGSEEGRILCSSASDPLLLPSGNSGLPVVTNDGRAGSSLDGRRAPCKRKSIEGNVAQSSLSGSSNYSQHIESGSEPHLPVFPGRYNTGSRLSIPPPPARMNQAPVRGAGELTSNSFSESIVAESSDSSHRNYRVRISSSNAQDSFASAGTAVRHPGPPSSQLPARLLPAEHVLDLRPAPAVDNVSAQGQPIMIHVPALPRSLQPYRWNGSSTSRSSSSSSAGERQVVQREEVRPSNMGRTVSEHPMFVPANELRSLVRSPSSRALASSNLSIPGNVASTSRVGTSSGVHPSSGPWIPPENSPTQFPRRLTEYVRRQLFASATNESGGRTNNYSQRSGSTSAQDMVLSSGSGRRGHHLLQPRSALWMERRGDGGLGLPYSLRTLATSGEGSDNNRLVSEHIRNVLGLVRRGESLRVEDVMILDQSLFFGMADIYDRHRDMRLDVDNMSYEELLALEERIGNVNTGLSEETIVARLKQKKRVNAVDSQVEEEPCCVCQEEYVEGEDIGTLECGHDFHTACIKQWLMQKNLCPICKTTGLASRE 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26361787 26365571 - CaPI482276_08g020810.1 Cam08g2081 134132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g2081 712 MobiDBLite consensus disorder prediction 491 518 - -
Cam08g2081 712 MobiDBLite consensus disorder prediction 191 251 - -
Cam08g2081 712 MobiDBLite consensus disorder prediction 375 417 - -
Cam08g2081 712 MobiDBLite consensus disorder prediction 1 29 - -
Cam08g2081 712 MobiDBLite consensus disorder prediction 436 462 - -
Cam08g2081 712 SMART ring_2 663 703 IPR001841 -
Cam08g2081 712 FunFam E3 ubiquitin-protein ligase MBR2 631 708 - -
Cam08g2081 712 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 213 709 IPR045191 GO:0061630(PANTHER)|GO:0061630(InterPro)
Cam08g2081 712 MobiDBLite consensus disorder prediction 223 243 - -
Cam08g2081 712 MobiDBLite consensus disorder prediction 436 475 - -
Cam08g2081 712 MobiDBLite consensus disorder prediction 280 300 - -
Cam08g2081 712 MobiDBLite consensus disorder prediction 375 396 - -
Cam08g2081 712 ProSiteProfiles Zinc finger RING-type profile. 663 704 IPR001841 -
Cam08g2081 712 MobiDBLite consensus disorder prediction 491 526 - -
Cam08g2081 712 Pfam Ring finger domain 663 704 IPR001841 -
Cam08g2081 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 626 707 IPR013083 -
Cam08g2081 712 SUPERFAMILY RING/U-box 657 706 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g2081 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1114 Cam-Chr4:25257638 Cam08g2081 Cam-Chr8:26361787 1.90E-28 dispersed
Cam07g1015 Cam-Chr7:24439885 Cam08g2081 Cam-Chr8:26361787 2.90E-31 dispersed
Cam08g2081 Cam-Chr8:26361787 Cam11g1799 Cam-Chr11:30515423 5.00E-26 dispersed
Cam08g2081 Cam-Chr8:26361787 Cam08g1724 Cam-Chr8:23519019 7.90E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g743 . . . . . . . . Cmo05g00171 . . . . . Sed11g0938 . . Bhi04g00370 Tan02g1797 . . . . . Cla08g01584 Cam08g2081 Cec08g1664 Cco08g1793 Clacu08g1767 . Cre08g1552 Cone4ag1588 Cone7ag1361 Cone17ag0852 Cone20ag0198 . . . . . . . . . Bpe05g00370 . . . . . . Cma05g00173 Car05g00146 . Cpe11g00142 . . . . . . . . . . . . . . . Lsi08g01487 Csa02g01933 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002893 2 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 9 6 2 55