Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g2084 ATGGTATTAAGCATGAAGGTTCATCAGTTTGCACGTGGATTTTGGGACGAACCCTCCCTCTCCCTTGGCTGCAAACGCTTACGCCCTCTTGCCCCTAAACTTCAACAACATAACCAACATCCCACCTCCGATACCACCACCACCACGCTCACCTCTTTTGACCTTAAGACCTTCATCAAACCCGATTGCGGTCCCCGAAAACTTGGTTCCTCCCATGATCATAACAAAGATTCTTCCTCCTCTTCTTCTTCCCTCCAGACAGGAGTGGAAACGCATCCAGGAGGAACACGATGGAATCCAACCCAAGAACAGATAGGGATATTGGAGATGCTTTATAGTAGAGGAATGAGGACTCCTAATGCCCAACAGATTGAACACATCACTGCCCAGCTCGGCAACTATGGCAAGATCGAAGGAAAGAACGTTTTCTATTGGTTTCAGAATCATAAAGCCCGTGAGCGACAGAAACAAAAACGCAATAGTCTTGGTCTTCCACACTCTCCCAGAACTCCTCCCCCTCCTCCCATCATCCCTACTTTCCACACGGCTGAGGATGATAGTCCGTACAAGAGGAAGTGTTTGTACTGGGGGTTTGAGTGTTTGGTAGAAGATCATAATGGTATAATGTGTAAAAAGGAGGAAGGTCATGATAGGACTCTGGAGTTATTTCCTTTGCACCCAGAACGCAGATGA 693 47.19 MVLSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHNQHPTSDTTTTTLTSFDLKTFIKPDCGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPTFHTAEDDSPYKRKCLYWGFECLVEDHNGIMCKKEEGHDRTLELFPLHPERR 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26379642 26380541 - CaPI482276_08g020840.1 Cam08g2084 134135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g2084 230 SUPERFAMILY Homeodomain-like 92 162 IPR009057 -
Cam08g2084 230 Gene3D - 95 162 - -
Cam08g2084 230 ProSiteProfiles 'Homeobox' domain profile. 91 156 IPR001356 GO:0003677(InterPro)
Cam08g2084 230 CDD homeodomain 96 157 IPR001356 GO:0003677(InterPro)
Cam08g2084 230 MobiDBLite consensus disorder prediction 64 102 - -
Cam08g2084 230 PANTHER WUSCHEL-RELATED HOMEOBOX 4 3 230 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
Cam08g2084 230 Pfam Homeodomain 96 155 IPR001356 GO:0003677(InterPro)
Cam08g2084 230 SMART HOX_1 93 160 IPR001356 GO:0003677(InterPro)
Cam08g2084 230 FunFam WUSCHEL-related homeobox 4 95 162 - -
Cam08g2084 230 MobiDBLite consensus disorder prediction 153 183 - -
Cam08g2084 230 MobiDBLite consensus disorder prediction 75 102 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1093 Cam-Chr4:25090649 Cam08g2084 Cam-Chr8:26379642 1.30E-23 dispersed
Cam06g1576 Cam-Chr6:27244752 Cam08g2084 Cam-Chr8:26379642 6.90E-23 dispersed
Cam08g2084 Cam-Chr8:26379642 Cam11g0659 Cam-Chr11:8159802 2.00E-21 dispersed
Cam08g2084 Cam-Chr8:26379642 Cam03g0161 Cam-Chr3:2509282 1.80E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52484 PF00046 Homeodomain 9.80E-19 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g2084 - - - 0.0