Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam08g2084 | ATGGTATTAAGCATGAAGGTTCATCAGTTTGCACGTGGATTTTGGGACGAACCCTCCCTCTCCCTTGGCTGCAAACGCTTACGCCCTCTTGCCCCTAAACTTCAACAACATAACCAACATCCCACCTCCGATACCACCACCACCACGCTCACCTCTTTTGACCTTAAGACCTTCATCAAACCCGATTGCGGTCCCCGAAAACTTGGTTCCTCCCATGATCATAACAAAGATTCTTCCTCCTCTTCTTCTTCCCTCCAGACAGGAGTGGAAACGCATCCAGGAGGAACACGATGGAATCCAACCCAAGAACAGATAGGGATATTGGAGATGCTTTATAGTAGAGGAATGAGGACTCCTAATGCCCAACAGATTGAACACATCACTGCCCAGCTCGGCAACTATGGCAAGATCGAAGGAAAGAACGTTTTCTATTGGTTTCAGAATCATAAAGCCCGTGAGCGACAGAAACAAAAACGCAATAGTCTTGGTCTTCCACACTCTCCCAGAACTCCTCCCCCTCCTCCCATCATCCCTACTTTCCACACGGCTGAGGATGATAGTCCGTACAAGAGGAAGTGTTTGTACTGGGGGTTTGAGTGTTTGGTAGAAGATCATAATGGTATAATGTGTAAAAAGGAGGAAGGTCATGATAGGACTCTGGAGTTATTTCCTTTGCACCCAGAACGCAGATGA | 693 | 47.19 | MVLSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHNQHPTSDTTTTTLTSFDLKTFIKPDCGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPTFHTAEDDSPYKRKCLYWGFECLVEDHNGIMCKKEEGHDRTLELFPLHPERR | 230 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 26379642 | 26380541 | - | CaPI482276_08g020840.1 | Cam08g2084 | 134135 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam08g2084 | 230 | SUPERFAMILY | Homeodomain-like | 92 | 162 | IPR009057 | - | |
Cam08g2084 | 230 | Gene3D | - | 95 | 162 | - | - | |
Cam08g2084 | 230 | ProSiteProfiles | 'Homeobox' domain profile. | 91 | 156 | IPR001356 | GO:0003677(InterPro) | |
Cam08g2084 | 230 | CDD | homeodomain | 96 | 157 | IPR001356 | GO:0003677(InterPro) | |
Cam08g2084 | 230 | MobiDBLite | consensus disorder prediction | 64 | 102 | - | - | |
Cam08g2084 | 230 | PANTHER | WUSCHEL-RELATED HOMEOBOX 4 | 3 | 230 | IPR044186 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro) | |
Cam08g2084 | 230 | Pfam | Homeodomain | 96 | 155 | IPR001356 | GO:0003677(InterPro) | |
Cam08g2084 | 230 | SMART | HOX_1 | 93 | 160 | IPR001356 | GO:0003677(InterPro) | |
Cam08g2084 | 230 | FunFam | WUSCHEL-related homeobox 4 | 95 | 162 | - | - | |
Cam08g2084 | 230 | MobiDBLite | consensus disorder prediction | 153 | 183 | - | - | |
Cam08g2084 | 230 | MobiDBLite | consensus disorder prediction | 75 | 102 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam04g1093 | Cam-Chr4:25090649 | Cam08g2084 | Cam-Chr8:26379642 | 1.30E-23 | dispersed | |
Cam06g1576 | Cam-Chr6:27244752 | Cam08g2084 | Cam-Chr8:26379642 | 6.90E-23 | dispersed | |
Cam08g2084 | Cam-Chr8:26379642 | Cam11g0659 | Cam-Chr11:8159802 | 2.00E-21 | dispersed | |
Cam08g2084 | Cam-Chr8:26379642 | Cam03g0161 | Cam-Chr3:2509282 | 1.80E-25 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52484 | PF00046 | Homeodomain | 9.80E-19 | CL0123 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam08g2084 | - | - | - | 0.0 |