Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g2089 ATGGTACCACCATATGAGCTTGATTCTCTTTATTGCTCAGAGGACCACTGGGAGGACGACGACGACCAAGAAGAAAGGGATTTTCATGAGCAACCTTACTCTAATTTAACAACCGAATCGAGTTCTCCGATTCTGGCAGTGGCAGAGCAGGATCTGTTTTGGGAAAACGATGAACTAAGTTCTCTGTTCTCAAGAGAGAAGCCTAATGAACTGTTTAAAACCATTCAGATTGACCCTTCTCTTGCCGTCGCTCGACGAAGCGCCGTCGAGTGGATGCTGAAGGTTAATGCCCATTACTCTTTCTCTGCTCTCACTGCGGTTCTCGCCGTCGATTACTTGGATCGGTTTCTGTCCTGTTTTCATTTCCAAAGAGACAAGCCATGGATGTCTCAGCTTGCTGCGGTTGCTTGTATCTCTCTTGCGGCCAAAGTAGAGGAGACCCAAGTCCCTCTTTTATTGGACCTACAAGTGGAAGACAGTAGATATCTGTTTGAAGCTAAGACCATTAAGAAAATGGAGCTTCTTGTGCTCTCTACGCTTCAATGGCGGATGAATCCTGTTACCCCATTTTCTTTTGTGGATTATGTCTCAAGGAGGCTTGGATTCAAGGACCATATCTGCTGGGAAATTCTTTGGCAGTGTGAGCGAACTATTCTCTCTGTTATTTTAGAGTCAGATTTCATGTCCTTTCTTCCTTCTGTAATGGCCACCGCCACAATGCTGCACGTTTTCAAAGCTATGGAAGAACCCCACCTCAGCGTTGAATACGATTCTCAGCTTCTTAACATCCTCGGAATCGACAAGGGGAATGTGGAGGAATGCTGTAAACTGATCTCAAATACATCTAGAAGAAACGGCAACCAATTCATGAAACGTAAATTTGGGTCGATTCCGGGCAGCCCGAACGGCGTGATGGACGTGTCATTCAGCTACGATAGCTCGAACGACTCGTGGTCAGTGGCTTCGTCGGTTTCATCTTCGCCAGAGCCTTTAACGAAGAAGAACAGAGCATATGGATCGGTGTCTGGGGATGGCGAAACATTTAGAACCCTCTCTTAA 1059 46.18 MVPPYELDSLYCSEDHWEDDDDQEERDFHEQPYSNLTTESSSPILAVAEQDLFWENDELSSLFSREKPNELFKTIQIDPSLAVARRSAVEWMLKVNAHYSFSALTAVLAVDYLDRFLSCFHFQRDKPWMSQLAAVACISLAAKVEETQVPLLLDLQVEDSRYLFEAKTIKKMELLVLSTLQWRMNPVTPFSFVDYVSRRLGFKDHICWEILWQCERTILSVILESDFMSFLPSVMATATMLHVFKAMEEPHLSVEYDSQLLNILGIDKGNVEECCKLISNTSRRNGNQFMKRKFGSIPGSPNGVMDVSFSYDSSNDSWSVASSVSSSPEPLTKKNRAYGSVSGDGETFRTLS 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26428121 26429516 + CaPI482276_08g020890.1 Cam08g2089 134140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g2089 352 CDD CYCLIN_AtCycD-like_rpt1 84 182 - -
Cam08g2089 352 SUPERFAMILY Cyclin-like 54 185 IPR036915 -
Cam08g2089 352 Gene3D - 186 276 - -
Cam08g2089 352 CDD CYCLIN_AtCycD-like_rpt2 187 278 - -
Cam08g2089 352 PANTHER CYCLINS 51 276 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cam08g2089 352 FunFam D3-type cyclin 78 185 - -
Cam08g2089 352 Pfam Cyclin, N-terminal domain 83 185 IPR006671 -
Cam08g2089 352 Pfam Cyclin, C-terminal domain 187 295 IPR004367 -
Cam08g2089 352 ProSitePatterns Cyclins signature. 85 116 IPR048258 -
Cam08g2089 352 Gene3D - 70 185 - -
Cam08g2089 352 SUPERFAMILY Cyclin-like 169 283 IPR036915 -
Cam08g2089 352 SMART cyclin_7 90 178 IPR013763 -
Cam08g2089 352 SMART Cyclin_C_2 187 313 IPR004367 -
Cam08g2089 352 MobiDBLite consensus disorder prediction 20 39 - -
Cam08g2089 352 MobiDBLite consensus disorder prediction 320 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1891 Cam-Chr1:32408441 Cam08g2089 Cam-Chr8:26428121 7.60E-47 dispersed
Cam05g1186 Cam-Chr5:11144878 Cam08g2089 Cam-Chr8:26428121 8.60E-78 dispersed
Cam08g2089 Cam-Chr8:26428121 Cam09g2102 Cam-Chr9:35595801 1.00E-32 dispersed
Cam01g1752 Cam-Chr1:31117588 Cam08g2089 Cam-Chr8:26428121 2.80E-67 wgd
Cam02g0660 Cam-Chr2:7659345 Cam08g2089 Cam-Chr8:26428121 3.60E-68 wgd
Cam05g2226 Cam-Chr5:30530614 Cam08g2089 Cam-Chr8:26428121 6.00E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g2089 K14505 - csv:101205442 579.326