Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g2100 ATGGCCGCGGCAGATAACTGTGTCCGTGTCACTCGTGCTTCCAAGAAGAGAGCTGCGGCGGCCGCCGTGGTCGAGGGCCAATCCGCCAATAAAAAGCGGGTGGTTCTTGGAGAGCTTTCCAACATTCAGAATGTTAATGGGTCAGTGGCCCCACAGAAGAGGAAGGCCAAGTCCCAGATGACTAAATGCAAGCCTAAGAAGAGAGCGAAGGTTGGTGTTGCTCCAACGATGAAGACGACGGTTGTTTCTGAAGATAATGATCCCAAGTTGACCGTTGATGATATTTTGGACGACCCAGAAATGAAGGGGCCTTATTCATCGGATATTTATGCTTATCTTCGCAAAATGGAGGCGGAACCAAAAAGAAGGCCGATTCCAAATTACATAGAGAAGATTCAGACGGATGTAAGTGCTAATATGAGAGGGGTTTTGGTTGATTGGATGGTTGAGGTAGCAGAGGAATACAAGCTTGGCTCCGATACTCTGTATCTATCCATCTCTTACCTCGATAGGTTCTTATCAATGAACATCCTCAGTAGGCAAAGGCTCCAATTGTTGGGGGTTTCTTCAATGCTTATTGCCTCGAAGTATGAAGAGATCACCCCTCCACATGTGGAGGATTTCTGTTACATAACAGATAATACTTACAGAAGGGATGAGGTTGTGAAGATGGAAGCTGATATACTTAAGTCTCTGAACTTTGAAATGGGAAATCCTACTGCCAAGACATTCTTAAGGAGGTTCACTAATATTGCTCAAGAAGATTTCAAAATACCAAATCTGCAGTTGGAGTTTCTTGGTTATTACCTTGCTGAGCTTAGCTTATTGGACTACAATTTTGTGAAGTTCTTGCCTTCTTTGGTTGCTGCCTCTGTTGTATTTCTTGCAAAATTTATCATCCGACCAAAGCTGCATCCTTGGGGTCCAAACATGCAACAATACACAGGCTACAAGCCAGCTGATCTAAGGCCATGTGTGATTCTGTTACATGATCTGTATATGGCCAGAAGAGGGGGGTCTCTGATAGCTGTGAGAGAAAAATACAAGCTACATAGGTTCAAATGTGTTGCAATGATGCCTTCACCTCCCGAGATACCGTTTTCATATTTTGAAGAAGCTTAG 1122 44.03 MAAADNCVRVTRASKKRAAAAAVVEGQSANKKRVVLGELSNIQNVNGSVAPQKRKAKSQMTKCKPKKRAKVGVAPTMKTTVVSEDNDPKLTVDDILDDPEMKGPYSSDIYAYLRKMEAEPKRRPIPNYIEKIQTDVSANMRGVLVDWMVEVAEEYKLGSDTLYLSISYLDRFLSMNILSRQRLQLLGVSSMLIASKYEEITPPHVEDFCYITDNTYRRDEVVKMEADILKSLNFEMGNPTAKTFLRRFTNIAQEDFKIPNLQLEFLGYYLAELSLLDYNFVKFLPSLVAASVVFLAKFIIRPKLHPWGPNMQQYTGYKPADLRPCVILLHDLYMARRGGSLIAVREKYKLHRFKCVAMMPSPPEIPFSYFEEA 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26488282 26490095 - CaPI482276_08g021000.1 Cam08g2100 134151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g2100 373 Gene3D - 124 237 - -
Cam08g2100 373 PANTHER CYCLINS 86 349 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cam08g2100 373 SUPERFAMILY Cyclin-like 97 236 IPR036915 -
Cam08g2100 373 SMART Cyclin_C_2 239 362 IPR004367 -
Cam08g2100 373 CDD CYCLIN_AtCycA-like_rpt2 239 353 - -
Cam08g2100 373 Pfam Cyclin, N-terminal domain 108 236 IPR006671 -
Cam08g2100 373 Gene3D - 108 358 - -
Cam08g2100 373 PIRSF Cyclin_A_B_D_E 1 367 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cam08g2100 373 ProSitePatterns Cyclins signature. 141 172 IPR048258 -
Cam08g2100 373 FunFam Cyclin A1 226 358 - -
Cam08g2100 373 SMART cyclin_7 146 230 IPR013763 -
Cam08g2100 373 SMART cyclin_7 243 331 IPR013763 -
Cam08g2100 373 FunFam Mitotic cyclin 6 124 224 - -
Cam08g2100 373 Pfam Cyclin, C-terminal domain 239 361 IPR004367 -
Cam08g2100 373 SUPERFAMILY Cyclin-like 239 364 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1030 Cam-Chr8:16541368 Cam08g2100 Cam-Chr8:26488282 4.00E-78 dispersed
Cam08g1748 Cam-Chr8:23722187 Cam08g2100 Cam-Chr8:26488282 4.40E-68 dispersed
Cam08g2100 Cam-Chr8:26488282 Cam09g0235 Cam-Chr9:2993662 3.30E-77 dispersed
Cam02g0694 Cam-Chr2:8189765 Cam08g2100 Cam-Chr8:26488282 5.80E-79 wgd
Cam05g2238 Cam-Chr5:30609286 Cam08g2100 Cam-Chr8:26488282 3.90E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g2100 K06627 - csv:101206145 697.197