Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g2101 ATGGCAATTTCTCCTCCTCCTCAACTGATTCAGCTCATCTGTATTTTCATTTTAGCTTTTGAAGCTTCACTTTCTGTTACCGTTGGATCCTCCATCTCCAACCTTGAATCAGACAGGCAATCTTTGATTTCCCTCAAGTCTGGATTCAATAATCTTAATCTTTACGACCCTTTATCTTCTTGGGATCAAAATTCATCTCCTTGCAATTGGACGGGAGTAACCTGCAATGAAGATGGTGAAAGAGTTGTTGAGCTTGATCTTTCTGGGTTGGCTCTGGCAGGGTCTCTGCATATGCAAATTGGCAATCTTTCATTCCTCAAATCCCTTCAACTTCAAAACAACCAATTAACAGGTCCAATTCCTATTCAAATTGGCAATCTTTTCCGCTTGCAAGTTCTGAATATGAGTTTCAATTACATAAGAGGTAGCCTCCCTTTCAACATCAGTGGAATGACAGAGCTTGAGATTCTTGACTTGACTTCAAACAGAATCACAAGCCAAATTCCACCAGAACTTAGCCAATTGACAAAGCTCAAGGTTTTGAACTTGGGACAGAATCATCTCTACGGTACAATTCCCCCATCTTTTGGGAACCTTTCTTCTCTCCTAACCTTCAATTTAGGAACCAATTCAGTGAGTGGTTCAATTCCTTCTGAATTGGGTCGTCTTCAAAATTTGAAGGATTTCATGATTTCCATTAATAATTTCAGTGGCATTGTTCCCTCTACCCTTTACAACATGTCTTCATTGGTTACTTTAATATTAGCTGCCAATCGTCTTCATGGAACACTCCCCAAGGATTTTGGAGATAATCTCCCAAATCTTTTGTTCTTCAATTTCTGTTTCAATAGATTTTCAGGGACAATTCCAGAATCAATGCACAATATGACTCAAATACGAATTATACGCTTTGCTCATAACCTTTTTGAAGGCACAATCCCACCAGGTTTGGAATATTTACCTAATCTTCAAATGTATTATATTGGACATAATAAGATCGTTAGTTCAGGTCCAAATGGGCTTAGTTTCATCTCTTCATTAACCAACAGCTCACGTCTTACTTTCATTGCTGTTGATGAAAACTATTTAGAAGGTGTGATTCCTGAATCCATTGGAAATCTTTCTAAAGTCTTTTCAAGGTTATACATGGGAGGGAATCGAATTTATGGGAATATACCATCTTCAATTGGTAACCTTCGTAGCTTAACTCTGTTGAATTTGAACAAAAACTTGCTAACTGGTGAAATCCCACTTCAAATTGGCCAATTGGAGCAGTTACAATTGTTGGGGTTAGCCAAAAACCAACTCTTTGGTAGAATTCCAAGCTCATTGGGGAACCTTAGAAAATTAAACCACATTGATTTGTCAGCAAACAATCTTATTGGGAACATCCCCATTTCTTTTGGGAACTTCACAAACTTGCTTGCAATGGATTTGTCAAACAATAAACTCAGTGGGGGAATACCCAAAGAGGCTCTAAATTATCCTAGTTTGAGCATGATTTTAAATCTTTCTAACAACATGCTAAGTGGGAATTTGCCACAAGAAATTGGGTTGCTTGGAAATGTTGAAAAAATTGACATCTCTGAAAATCTCATTTCTGGCAACATTCCTCCTTCCATCGTTGGCTGCAAGAGCTTGGAGGTATTAACAATGGCCAAGAATGAATTTTCAGGTCAAATTCCAACTACCCTTGGAGAAATCAAGGGGTTGCGAGCTTTAGATCTTTCCTCCAACAAACTTTCAGGTCCCATTCCTAAGAATCTTCAAAACAGAACAGCAATACAGCTCTTGAATCTCTCATTCAACGACCTTGAAGGAGTAGTTTCGGAAGGTGAAGGAGCCAATTTAGAAGGAAACCCAAAACTTTGCTTGCCTTCCTTATGTCAAAATAACAAACCCCACAACAAAAAAAGAATCAAAATCATATCTTTAACAGTCATCTTCTCAACATTAGCATTCTGTTTCACACTGGGAACTTGGTTTCATCTGGCTAAGAAAACGTCAAAAGCTTCACCATCATCATCAACGGATGAATTGATAAAAAGGCAACACAAAATGATCTCGTACGAGGAGATTCGAACCGGCACTGCAAATTTCAGTGAGGAAAATTTGGTGGGAAAAGGAAGTTTTGGGTCAGTTTACAAAGGGTATCTAAATCTAAATGAAATAGAAGGGGGAGTTTTTGCAATCAAAGTGTTGAACATTGAACGAAGTGGGTATATTAAGAGCTTTTTGGCGGAGTGTGAAGCATTGAGAAACGTGAGGCATAGGAATTTAGTGAAGCTCATTACATCTTGCTCGAGTATAGACTATGAAGGGAGGGATTTTAGAGGTTTGGTTTATGAGTTTTTGTGTAATGGAAGCTTGGAGGAGTGGATTCATGGGGAAAGGCATCACTTGGATGGAAGTGGGCTGGATTTAATGGAGAGATTGAACATTGGGATTGATGTTGGGTGTGCTTTGGAGTATCTTCACCATGGCTGTCAAGTGCCAATTGTTCACTGTGATTTGAAGCCTAGTAACATTCTGTTGGGGGAAGATATGAGTGCAAAAGTTGGGGACTTTGGGTTGGCCAGGTTGTTGATGGAAAATGAAGCAAATCAATATTTTTCCATCACTTCCTCTCGTGTTCTTAAAGGTTCCATTGGTTACATTCCTCCAGAATACGGCATGGGAAGAACGGCAACGGTGGCCGGAGATGTTTATAGTTTCGGGATAACTCTGTTGGAGCTTTTTACTGGGAAGAGTCCGACCGATGAAGGATTTACCGAAGAACAAAATCTAATTAGATGGGCTCAATCCACTTATTCGACACATTTGATGCAAACAATTGGATCTCCTAATAACCAATTAAGCCTAATTGGGTTCCATTCCCACTGCGAAGGTCGACAGATTAGTGAACATAACCAAATGGATTGCTTGATTGAAGTCATCGACGTTGCCATCTCTTGCGCCGCTCATTCCGCTAATGAACGCATTACCATTAAGGATGCCCTTTTGAGGCTTCAAAATGCTAGAAATTCCATGTTGAGAATGAGTTAG 3045 39.41 MAISPPPQLIQLICIFILAFEASLSVTVGSSISNLESDRQSLISLKSGFNNLNLYDPLSSWDQNSSPCNWTGVTCNEDGERVVELDLSGLALAGSLHMQIGNLSFLKSLQLQNNQLTGPIPIQIGNLFRLQVLNMSFNYIRGSLPFNISGMTELEILDLTSNRITSQIPPELSQLTKLKVLNLGQNHLYGTIPPSFGNLSSLLTFNLGTNSVSGSIPSELGRLQNLKDFMISINNFSGIVPSTLYNMSSLVTLILAANRLHGTLPKDFGDNLPNLLFFNFCFNRFSGTIPESMHNMTQIRIIRFAHNLFEGTIPPGLEYLPNLQMYYIGHNKIVSSGPNGLSFISSLTNSSRLTFIAVDENYLEGVIPESIGNLSKVFSRLYMGGNRIYGNIPSSIGNLRSLTLLNLNKNLLTGEIPLQIGQLEQLQLLGLAKNQLFGRIPSSLGNLRKLNHIDLSANNLIGNIPISFGNFTNLLAMDLSNNKLSGGIPKEALNYPSLSMILNLSNNMLSGNLPQEIGLLGNVEKIDISENLISGNIPPSIVGCKSLEVLTMAKNEFSGQIPTTLGEIKGLRALDLSSNKLSGPIPKNLQNRTAIQLLNLSFNDLEGVVSEGEGANLEGNPKLCLPSLCQNNKPHNKKRIKIISLTVIFSTLAFCFTLGTWFHLAKKTSKASPSSSTDELIKRQHKMISYEEIRTGTANFSEENLVGKGSFGSVYKGYLNLNEIEGGVFAIKVLNIERSGYIKSFLAECEALRNVRHRNLVKLITSCSSIDYEGRDFRGLVYEFLCNGSLEEWIHGERHHLDGSGLDLMERLNIGIDVGCALEYLHHGCQVPIVHCDLKPSNILLGEDMSAKVGDFGLARLLMENEANQYFSITSSRVLKGSIGYIPPEYGMGRTATVAGDVYSFGITLLELFTGKSPTDEGFTEEQNLIRWAQSTYSTHLMQTIGSPNNQLSLIGFHSHCEGRQISEHNQMDCLIEVIDVAISCAAHSANERITIKDALLRLQNARNSMLRMS 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26493569 26497759 - CaPI482276_08g021010.1 Cam08g2101 134152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g2101 1014 Gene3D Ribonuclease Inhibitor 186 246 IPR032675 -
Cam08g2101 1014 Gene3D Ribonuclease Inhibitor 344 635 IPR032675 -
Cam08g2101 1014 SMART serkin_6 700 1011 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g2101 1014 ProSitePatterns Protein kinases ATP-binding region signature. 706 732 IPR017441 GO:0005524(InterPro)
Cam08g2101 1014 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 785 1014 - -
Cam08g2101 1014 ProSiteProfiles Protein kinase domain profile. 700 1011 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g2101 1014 ProSiteProfiles Leucine-rich repeat profile. 153 175 IPR001611 GO:0005515(InterPro)
Cam08g2101 1014 Gene3D Transferase(Phosphotransferase) domain 1 785 1013 - -
Cam08g2101 1014 SUPERFAMILY Protein kinase-like (PK-like) 675 1003 IPR011009 -
Cam08g2101 1014 SUPERFAMILY L domain-like 380 626 - -
Cam08g2101 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 833 845 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam08g2101 1014 Pfam Protein kinase domain 701 1000 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g2101 1014 Pfam Leucine rich repeat N-terminal domain 36 76 IPR013210 -
Cam08g2101 1014 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 514 609 - -
Cam08g2101 1014 SUPERFAMILY L domain-like 37 334 - -
Cam08g2101 1014 FunFam Leucine-rich repeat receptor-like protein kinase TDR 219 499 - -
Cam08g2101 1014 Pfam Leucine rich repeat 129 188 IPR001611 GO:0005515(InterPro)
Cam08g2101 1014 Pfam Leucine Rich Repeat 106 127 IPR001611 GO:0005515(InterPro)
Cam08g2101 1014 Pfam Leucine Rich Repeat 571 591 IPR001611 GO:0005515(InterPro)
Cam08g2101 1014 Pfam Leucine Rich Repeat 449 471 IPR001611 GO:0005515(InterPro)
Cam08g2101 1014 FunFam Leucine-rich repeat receptor-like protein kinase 35 194 - -
Cam08g2101 1014 Gene3D Ribonuclease Inhibitor 247 343 IPR032675 -
Cam08g2101 1014 FunFam LRR receptor-like serine/threonine-protein kinase EFR 671 784 - -
Cam08g2101 1014 SMART LRR_typ_2 151 174 IPR003591 -
Cam08g2101 1014 SMART LRR_typ_2 471 495 IPR003591 -
Cam08g2101 1014 SMART LRR_typ_2 199 223 IPR003591 -
Cam08g2101 1014 SMART LRR_typ_2 103 127 IPR003591 -
Cam08g2101 1014 SMART LRR_typ_2 399 423 IPR003591 -
Cam08g2101 1014 SMART LRR_typ_2 175 198 IPR003591 -
Cam08g2101 1014 SMART LRR_typ_2 247 271 IPR003591 -
Cam08g2101 1014 Gene3D Ribonuclease Inhibitor 33 185 IPR032675 -
Cam08g2101 1014 Gene3D Phosphorylase Kinase; domain 1 662 784 - -
Cam08g2101 1014 PANTHER OS04G0122200 PROTEIN 50 1004 IPR051809 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g2101 Cam-Chr8:26493569 Cam08g2105 Cam-Chr8:26511642 2.10E-131 dispersed
Cam08g2101 Cam-Chr8:26493569 Cam08g2102 Cam-Chr8:26500149 1.20E-129 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85396 PF00069 Pkinase 5.70E-37 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g2101 - - - 0.0