Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam08g2119 | ATGGAGGCTTTGGGAGGCTTTTCCGATGGGGAATGGGAATCTTTCGCCGCCATGTTCTCATCGGAAGAGGTAAATCAGAGCCATATTCCGATGGCTAAGTATTCCAATGAGCTTCAATTGCCGGACAATGGCGGCAGTAGTTGGTTCTATTCATTGGATGCTTTTGTTCCTAATTTACAGAGTAATTGTAAACAGGACATAAGGAGCTGCAGTAGCTGCAGTACTACCGATAATTATAGTGCTTCAGTTTTAATTCCGAATTCGAGTGATTATTTTATGCCAATTGATGAGAGGAATTTTGGGTCTTCGTTTTTTTCTGATGTTTTAATTGAGGAAGTCGATAATGCTCTCGCCGCCGCCGCTGAAGGGGAAGATTCCAGCATGGAGAGATTCATTGAGAATAATGTACTACTGGGTAGCCACCCGCCGCCGTCGCCGGTCGTAGATTCCAACGGTGCCAGAAACAAACCAATTGTATTGAAGAGGAAAGTCAATGAGGGGGACATTTCTGATAATCAGAAGAAAAAATCTCGGATCTCCTCACACGGGCAGAAGAAGAAGAAAACAGAGGAGAGGAGAGGAGGGGAAAGTGTAGAGGAAGAAGGGAATACAGGTGGAGCATCAGAAGGACAAAGCTCCATTAGTTACAGTTCCGATCAGGAAGAGAATGGTTCCGAGGAGGGAAACGGCGGCGGCTTCAACAGGAAAAGCAGAGCAAGCAGAGGATCGGCCACCGATCCCCAAAGCCTCTACGCCAGAAAACGAAGAGAAAGAATCAATGAGCGATTGAGAATCTTACAGAAACTTGTTCCCAATGGAACCAAGGTTGATATCAGTACCATGCTTGAAGAAGCAGTTCATTATGTCAAGTTTTTACAGCTCCAAATCAAGTTATTGAGCTCAGATGAGATGTGGATGTTTGCTCCTTTGGCTTACAATGGAATCGACCTTGGCCTTCACCAGAAGCTCTCTCCATTTCTATCACATTGA | 990 | 45.05 | MEALGGFSDGEWESFAAMFSSEEVNQSHIPMAKYSNELQLPDNGGSSWFYSLDAFVPNLQSNCKQDIRSCSSCSTTDNYSASVLIPNSSDYFMPIDERNFGSSFFSDVLIEEVDNALAAAAEGEDSSMERFIENNVLLGSHPPPSPVVDSNGARNKPIVLKRKVNEGDISDNQKKKSRISSHGQKKKKTEERRGGESVEEEGNTGGASEGQSSISYSSDQEENGSEEGNGGGFNRKSRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDEMWMFAPLAYNGIDLGLHQKLSPFLSH | 329 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 26599842 | 26601960 | + | CaPI482276_08g021190.1 | Cam08g2119 | 134170 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam08g2119 | 329 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 76 | 312 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Cam08g2119 | 329 | CDD | bHLH_AtIND_like | 244 | 306 | - | - | |
Cam08g2119 | 329 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 243 | 305 | IPR036638 | GO:0046983(InterPro) | |
Cam08g2119 | 329 | MobiDBLite | consensus disorder prediction | 160 | 255 | - | - | |
Cam08g2119 | 329 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 243 | 292 | IPR011598 | GO:0046983(InterPro) | |
Cam08g2119 | 329 | MobiDBLite | consensus disorder prediction | 204 | 227 | - | - | |
Cam08g2119 | 329 | Gene3D | - | 245 | 308 | IPR036638 | GO:0046983(InterPro) | |
Cam08g2119 | 329 | Pfam | Helix-loop-helix DNA-binding domain | 253 | 293 | IPR011598 | GO:0046983(InterPro) | |
Cam08g2119 | 329 | MobiDBLite | consensus disorder prediction | 160 | 199 | - | - | |
Cam08g2119 | 329 | FunFam | Basic helix-loop-helix transcription factor | 244 | 301 | - | - | |
Cam08g2119 | 329 | SMART | finulus | 249 | 298 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam08g2119 | Cam-Chr8:26599842 | Cam10g1021 | Cam-Chr10:22591753 | 1.70E-37 | dispersed | |
Cam03g0879 | Cam-Chr3:10942864 | Cam08g2119 | Cam-Chr8:26599842 | 1.60E-18 | transposed | |
Cam02g0712 | Cam-Chr2:8469170 | Cam08g2119 | Cam-Chr8:26599842 | 5.30E-36 | wgd | |
Cam05g2254 | Cam-Chr5:30716309 | Cam08g2119 | Cam-Chr8:26599842 | 2.60E-41 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52488 | PF00010 | HLH | 9.70E-09 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam08g2119 | - | - | - | 0.0 |