Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g2119 ATGGAGGCTTTGGGAGGCTTTTCCGATGGGGAATGGGAATCTTTCGCCGCCATGTTCTCATCGGAAGAGGTAAATCAGAGCCATATTCCGATGGCTAAGTATTCCAATGAGCTTCAATTGCCGGACAATGGCGGCAGTAGTTGGTTCTATTCATTGGATGCTTTTGTTCCTAATTTACAGAGTAATTGTAAACAGGACATAAGGAGCTGCAGTAGCTGCAGTACTACCGATAATTATAGTGCTTCAGTTTTAATTCCGAATTCGAGTGATTATTTTATGCCAATTGATGAGAGGAATTTTGGGTCTTCGTTTTTTTCTGATGTTTTAATTGAGGAAGTCGATAATGCTCTCGCCGCCGCCGCTGAAGGGGAAGATTCCAGCATGGAGAGATTCATTGAGAATAATGTACTACTGGGTAGCCACCCGCCGCCGTCGCCGGTCGTAGATTCCAACGGTGCCAGAAACAAACCAATTGTATTGAAGAGGAAAGTCAATGAGGGGGACATTTCTGATAATCAGAAGAAAAAATCTCGGATCTCCTCACACGGGCAGAAGAAGAAGAAAACAGAGGAGAGGAGAGGAGGGGAAAGTGTAGAGGAAGAAGGGAATACAGGTGGAGCATCAGAAGGACAAAGCTCCATTAGTTACAGTTCCGATCAGGAAGAGAATGGTTCCGAGGAGGGAAACGGCGGCGGCTTCAACAGGAAAAGCAGAGCAAGCAGAGGATCGGCCACCGATCCCCAAAGCCTCTACGCCAGAAAACGAAGAGAAAGAATCAATGAGCGATTGAGAATCTTACAGAAACTTGTTCCCAATGGAACCAAGGTTGATATCAGTACCATGCTTGAAGAAGCAGTTCATTATGTCAAGTTTTTACAGCTCCAAATCAAGTTATTGAGCTCAGATGAGATGTGGATGTTTGCTCCTTTGGCTTACAATGGAATCGACCTTGGCCTTCACCAGAAGCTCTCTCCATTTCTATCACATTGA 990 45.05 MEALGGFSDGEWESFAAMFSSEEVNQSHIPMAKYSNELQLPDNGGSSWFYSLDAFVPNLQSNCKQDIRSCSSCSTTDNYSASVLIPNSSDYFMPIDERNFGSSFFSDVLIEEVDNALAAAAEGEDSSMERFIENNVLLGSHPPPSPVVDSNGARNKPIVLKRKVNEGDISDNQKKKSRISSHGQKKKKTEERRGGESVEEEGNTGGASEGQSSISYSSDQEENGSEEGNGGGFNRKSRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDEMWMFAPLAYNGIDLGLHQKLSPFLSH 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26599842 26601960 + CaPI482276_08g021190.1 Cam08g2119 134170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g2119 329 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 76 312 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cam08g2119 329 CDD bHLH_AtIND_like 244 306 - -
Cam08g2119 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 243 305 IPR036638 GO:0046983(InterPro)
Cam08g2119 329 MobiDBLite consensus disorder prediction 160 255 - -
Cam08g2119 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 243 292 IPR011598 GO:0046983(InterPro)
Cam08g2119 329 MobiDBLite consensus disorder prediction 204 227 - -
Cam08g2119 329 Gene3D - 245 308 IPR036638 GO:0046983(InterPro)
Cam08g2119 329 Pfam Helix-loop-helix DNA-binding domain 253 293 IPR011598 GO:0046983(InterPro)
Cam08g2119 329 MobiDBLite consensus disorder prediction 160 199 - -
Cam08g2119 329 FunFam Basic helix-loop-helix transcription factor 244 301 - -
Cam08g2119 329 SMART finulus 249 298 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g2119 Cam-Chr8:26599842 Cam10g1021 Cam-Chr10:22591753 1.70E-37 dispersed
Cam03g0879 Cam-Chr3:10942864 Cam08g2119 Cam-Chr8:26599842 1.60E-18 transposed
Cam02g0712 Cam-Chr2:8469170 Cam08g2119 Cam-Chr8:26599842 5.30E-36 wgd
Cam05g2254 Cam-Chr5:30716309 Cam08g2119 Cam-Chr8:26599842 2.60E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52488 PF00010 HLH 9.70E-09 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g2119 - - - 0.0