Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g2124 ATGCCTTGGAGGGAGGGAGATGGCAGCCGTGGAGGGACTCGAAGTGGCGACTGCCGGTCGGTGGAGCTTCGGATGATCTGCAAATGGAACCGTGGAGGGAGGAGATGGGAGGCGTGGGATGCGATGAGAAGGGGAGGAAACCGAGTTGGGCCAAACCGTCTCCGCAGTTTGGATCTGGTAGCCCAATCACACGGAAGCCCAGAGCGACCATCTTTCTTCTCACCGAAGAATCAAGTGGGGAAGATACTGTTGCAGAAAATAGATAGAGACAGAGAGGAAGATACAGCGTTTTTGCATGAGGGCAAAGATGCTTGGAGAATGTGGAAGGATATTAGAGATAGAGAAGCGGGAAAACTCCGCCCAAATTCTTTCGCAAATCGTGTTAAATCCGATCGAACCAGCTCTTTGCAACTTTCCAATCACAAGGACATTGTCTCTCCCCATAGAGGTTCCGTCAACTCACTTCAGGTTGATTTGACAGAGGGGAGATATTTGTTGTCTGGAGCATCGGATGCATCAGCTGCTGTTTTTGATATTCAACGTGCAACTCACTCCGAGGGTCTTATTGCAAAGCACCAATGCATTTTTGCAGTTGATAAGCAGCATGAACATGGACATCAATATGCAATATCCTCAGCCATATGGTATCCCGTTGATACTGGATTGTTTGTCACTGGCTCATATGATCATCACATTAATGTCTGGGATACAAATACAACTCAGGTGGTGGTGAATTTTAAATTGCCTGGAAAAGTTTATAGGACAGCCATGTCCTCTTTGGCAACATCACACATGCTGATTGCTGCTGGAACAGAAGATGTTCAAGTTCGCCTTTGTGATATTTCTTCTGGAGCATTTTCTCACACATTATCTGGACATCGTGATGGTGTAATGAGTGTAGCATGGTCAGCTTCTAGCGAGTGGGTTTTGATTACTGGAGGATGTGATGGAGCTATACGCTTTTGGGACATCAGACGAGCTGGATGCTTTCGTGTTCTAGATCAGTCTCAATCTCAGCTTGGGAGACGTCCCCCTATTTCAGGATGGACTGCAAATAAGCTCTCAACATCTAAGTCCCTCTTGGCCAGCCAAGGTTCAAATATGAAATCTCGCATACCTCATAAGAAACTAGCCAATGGAAATGCAACAAAGCCATCAGCCACAGGTAAACTGCCGGCTAAGGGATCCACAAGGCAGAGGTTACACCCAGGGCTTTTGTCCAGTCAGGATCGAGCAGTTTCTCACTATGGTGCTGTCACTGGATTAAAAGTAACTGGAGATGGCATGTACCTTCTCAGTGCAGGTTCTGATTCAAGGTTAAAGTTATGGGATGTTGAATCCGGGTGCAATACACTCGTGAATTATGAAACCATGCGGTTACAGACCAATAAACCATTGCAATTAGCCACATCTGAGGATTCAGCCCTTGTATTTGCCCCATGCATGGCGACTGTTAAAGCATTTGATATGTGGACAGGGAAGACATCCCTGACATTCAGCGGCCACTATGAAGGTGTGAACTGTTGCTGGTATAATTTCCCAGATCAGGAACTGTACACCGGTGGCAATGATAGGCAAATTCTCGTCTGGTCACCATCCCGAAACTCTACCGAACTGTGGACTCGCAGGATTGGGAATCGACTGCAGACAGGGATAACTGGAGCGACTGACTGTTGTCGACAAGGAAGTTTGGTTTCAATGCTGATGCCATCCATCAGACTCTGCTCACCATGTACATAA 1740 46.9 MPWREGDGSRGGTRSGDCRSVELRMICKWNRGGRRWEAWDAMRRGGNRVGPNRLRSLDLVAQSHGSPERPSFFSPKNQVGKILLQKIDRDREEDTAFLHEGKDAWRMWKDIRDREAGKLRPNSFANRVKSDRTSSLQLSNHKDIVSPHRGSVNSLQVDLTEGRYLLSGASDASAAVFDIQRATHSEGLIAKHQCIFAVDKQHEHGHQYAISSAIWYPVDTGLFVTGSYDHHINVWDTNTTQVVVNFKLPGKVYRTAMSSLATSHMLIAAGTEDVQVRLCDISSGAFSHTLSGHRDGVMSVAWSASSEWVLITGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPISGWTANKLSTSKSLLASQGSNMKSRIPHKKLANGNATKPSATGKLPAKGSTRQRLHPGLLSSQDRAVSHYGAVTGLKVTGDGMYLLSAGSDSRLKLWDVESGCNTLVNYETMRLQTNKPLQLATSEDSALVFAPCMATVKAFDMWTGKTSLTFSGHYEGVNCCWYNFPDQELYTGGNDRQILVWSPSRNSTELWTRRIGNRLQTGITGATDCCRQGSLVSMLMPSIRLCSPCT 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26649150 26656009 - CaPI482276_08g021240.1 Cam08g2124 134175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g2124 579 ProSiteProfiles Trp-Asp (WD) repeats profile. 499 531 IPR001680 GO:0005515(InterPro)
Cam08g2124 579 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 107 537 IPR042238 GO:0000109(PANTHER)|GO:0000209(PANTHER)|GO:0006283(PANTHER)|GO:0006283(InterPro)|GO:0031464(PANTHER)|GO:0043161(PANTHER)
Cam08g2124 579 MobiDBLite consensus disorder prediction 363 400 - -
Cam08g2124 579 ProSiteProfiles Trp-Asp (WD) repeats profile. 203 245 IPR001680 GO:0005515(InterPro)
Cam08g2124 579 SUPERFAMILY WD40 repeat-like 145 535 IPR036322 GO:0005515(InterPro)
Cam08g2124 579 Pfam WD domain, G-beta repeat 204 236 IPR001680 GO:0005515(InterPro)
Cam08g2124 579 Pfam WD domain, G-beta repeat 286 323 IPR001680 GO:0005515(InterPro)
Cam08g2124 579 Pfam WD domain, G-beta repeat 494 531 IPR001680 GO:0005515(InterPro)
Cam08g2124 579 Pfam WD domain, G-beta repeat 414 444 IPR001680 GO:0005515(InterPro)
Cam08g2124 579 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 203 239 - -
Cam08g2124 579 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 412 448 - -
Cam08g2124 579 FunFam Excision repair cross-complementation group 8 392 534 - -
Cam08g2124 579 ProSitePatterns Trp-Asp (WD) repeats signature. 431 445 IPR019775 -
Cam08g2124 579 ProSiteProfiles Trp-Asp (WD) repeats profile. 412 453 IPR001680 GO:0005515(InterPro)
Cam08g2124 579 FunFam Transducin/WD40 repeat-like superfamily protein 108 370 - -
Cam08g2124 579 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 290 325 - -
Cam08g2124 579 SMART WD40_4 283 323 IPR001680 GO:0005515(InterPro)
Cam08g2124 579 SMART WD40_4 138 178 IPR001680 GO:0005515(InterPro)
Cam08g2124 579 SMART WD40_4 492 531 IPR001680 GO:0005515(InterPro)
Cam08g2124 579 SMART WD40_4 191 236 IPR001680 GO:0005515(InterPro)
Cam08g2124 579 SMART WD40_4 406 444 IPR001680 GO:0005515(InterPro)
Cam08g2124 579 Gene3D - 107 534 IPR015943 GO:0005515(InterPro)
Cam08g2124 579 ProSiteProfiles Trp-Asp (WD) repeats profile. 290 332 IPR001680 GO:0005515(InterPro)
Cam08g2124 579 ProSitePatterns Trp-Asp (WD) repeats signature. 310 324 IPR019775 -
Cam08g2124 579 PRINTS G protein beta WD-40 repeat signature 310 324 IPR020472 -
Cam08g2124 579 PRINTS G protein beta WD-40 repeat signature 431 445 IPR020472 -
Cam08g2124 579 PRINTS G protein beta WD-40 repeat signature 223 237 IPR020472 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g2124 K10570 - - csv:101209203 865.914
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g648 . . . . . . . . . Cmo12g00539 . . . Car12g00543 . . Cpe07g00517 Bhi04g00418 Tan02g1734 Cmetu03g0611 . Hepe08g1335 . Lcy13g2133 Cla08g01622 Cam08g2124 Cec08g1709 Cco08g1833 Clacu08g1810 . Cre08g1591 . . Cone17ag0887 Cone20ag0234 . . . Cme03g02103 . . . . . . . . . . . Cma12g00599 . . . . . . . . . . . . . . . . . . . Lsi08g01528 Csa02g01894 Chy03g01592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007829 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 6 1 36