Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g2128 ATGCTGTGCGCTTGTTCAGGAGAGCAATTCAAGTTTGAAGAGCCACCGCAGTCCCCAGAGTCACTTGCGACGAGAGATTTCTCGGCCAGTTGCCTTTCCTCGAGAACTGGAGACTGGGATTTGAAATTTGAAGATTCTCAAGTAGATGAAGTTGAATCCACTTTAAGAGAAGCCCTCTCATTAAACTACGAGGAAGCCCGAGCTTTGCTGGGGAGGCTTGAATATCAAAGAGGAAATTTTGATGCTGCCCTACAGGTATTTCAAGGAATAGACATTAGATCTTTGACGCCAAGAATGGTTAAAGCAATCACTGAAAAGATAAGAGAGTATAAGCCTCGTCCTAAATGTGACAATGCCCCCCCTAGTGGTGTAATGTCCATGCATTCTGTTAGCCTACTACTTGAGGCAATTTTACTCAAGGCAAAATCACTGGAGGAACTTGGCAAATATATAGAGTCTGCAAAAGAGTGCAGGATAATTCTTGATACGGTGGAATCAGCTCTGCCTAATGGAATGCCCGAGTGCATTGGTGAAGACTGCAAATTGCAGGAAATGTTTCACAAAGCTTTGGAATTACTGCCTACTTTGTGGATTAAGGGAGGGTATCTTGATGAGGCCATAAACGCCTATCGCCGTGTCCTTGTTAAACCATGGAATCTAGATCCAAACAAGTTGGCTGCCATACAGAAAGAATTGGCTGGGACATTACTCTATGGAGGTGTTGAAGCAAGCCTTCCCCTTAAGTTTCATGTATTTGGTCCAAGAACACCTAAAAACAATGTAGAAGAAGCAATCCTTCTGTTGCTAATACTCATGAGGAAAGTGGTGATGCAGGAAATAAACTGGGATCCTGAGATTATGAATCATCTGACTTATGCACTTTCTATCACTAGACAATTTGAATTACTCGCTGAGCATGTAGAGCGGATCCTTCCTGGAATATATAGTCGAGCTGAGAGGTGGTACTTTCTTGCTCTATGTTACAATGCAGCAGGACAGAATGAAGCAGCTTTGAACCTTCTAATGAAAGTTTGCGGTTCCTCTGAAGTAAAGCACAAGCCCCATTTTCATTCTATTTTGTTGCTTGCAAAATTGTGTTCGGAGGATACAAAATATGCACGTGATGGAATTAAATTTGCTCATAGAATGATCAATATGGACAGTGAACAAGGTAAGCATTTCAATCCTGAAGCCCACAAATTTTTAGGTGTTTGCTATGGGAATGCAGCTAGAGCGTCTGTGTCAGACTCTGAAAGAACTCTTTTCCAAAAAGAATCATTGAACTCCCTACGAGTTTCTTCTCTCGATAGGAGGCATGATCCAGAAGTAATGTTCAACATTAGCTTGGAAAATGCGGTGCAGAGAAATCTTGATGTTGCCTTCTACAGTGCAATGGCGTACTCAAATATGGTGGCTGATGGTTCCGGAAGAGGTTGGAAGCTTTTGACCCTCATACTTTCGGCTGAGAAGCGACTCAAGGATGCTGAAAGCATAGTTGATTTTGCTTTGGATGAAGCTGATAGGATGGACCAATTGGATTTTCTTCGATTGAAAGCTGTCCTAAAAATTGCTCAGGAACAGCCAAAGCAAGCAATAGAAACCTACAGGATCTTGCTAGCACTAATTCAAGGGCGAGATGAACTTCAGCTTCAGGCTAAGAACTTTGACCAATCCAAGGACTTGGAACTGGAGGCAGTGGCAGAACGTAACTTGGAACGGGCAGCCTGGCAGGATTTGGCTGCCATATATTCAAAACTTGCTTCCTGGGCGGATGCAGAAATCTGTCTGAACAAAGCCAAGTCATTAGATGTTCATTGCCCCAGAGGTTGGCATACAACAGGCAAGTATTTTGAAGCTCGATCATTACACAAGGAAGCCCTTGTTTCATTCTCTGTCTCTCTTTCGATCGATCCTGATTATATTCCGAGTATCATCTCAACAGCAGAAATATTGATGAAATGCGGTAACCAATCACTTCCAATTGCACGTAGCTTGTTGATGAATGCTGTAAGATTGGATCCTACAAGCCATGAAGCATGGTTCAACCTTGGAGTGCTTTCCAAAATGGAAGGTCTGTTGCTACAAGCTGCAGATTTTTTTCAAGCTGCACATGAACTCCAACTATCTGCTCCTCTTCAAAGTTTCGTCTAA 2151 42.72 MLCACSGEQFKFEEPPQSPESLATRDFSASCLSSRTGDWDLKFEDSQVDEVESTLREALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIRSLTPRMVKAITEKIREYKPRPKCDNAPPSGVMSMHSVSLLLEAILLKAKSLEELGKYIESAKECRIILDTVESALPNGMPECIGEDCKLQEMFHKALELLPTLWIKGGYLDEAINAYRRVLVKPWNLDPNKLAAIQKELAGTLLYGGVEASLPLKFHVFGPRTPKNNVEEAILLLLILMRKVVMQEINWDPEIMNHLTYALSITRQFELLAEHVERILPGIYSRAERWYFLALCYNAAGQNEAALNLLMKVCGSSEVKHKPHFHSILLLAKLCSEDTKYARDGIKFAHRMINMDSEQGKHFNPEAHKFLGVCYGNAARASVSDSERTLFQKESLNSLRVSSLDRRHDPEVMFNISLENAVQRNLDVAFYSAMAYSNMVADGSGRGWKLLTLILSAEKRLKDAESIVDFALDEADRMDQLDFLRLKAVLKIAQEQPKQAIETYRILLALIQGRDELQLQAKNFDQSKDLELEAVAERNLERAAWQDLAAIYSKLASWADAEICLNKAKSLDVHCPRGWHTTGKYFEARSLHKEALVSFSVSLSIDPDYIPSIISTAEILMKCGNQSLPIARSLLMNAVRLDPTSHEAWFNLGVLSKMEGLLLQAADFFQAAHELQLSAPLQSFV 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26663923 26666619 + CaPI482276_08g021280.1 Cam08g2128 134179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g2128 716 Gene3D Tetratricopeptide repeat domain 541 712 IPR011990 GO:0005515(InterPro)
Cam08g2128 716 SUPERFAMILY TPR-like 48 343 IPR011990 GO:0005515(InterPro)
Cam08g2128 716 PANTHER PROTEIN NPG1 1 715 IPR043376 -
Cam08g2128 716 Coils Coil 485 505 - -
Cam08g2128 716 SUPERFAMILY TPR-like 550 707 IPR011990 GO:0005515(InterPro)
Cam08g2128 716 Gene3D Tetratricopeptide repeat domain 258 540 IPR011990 GO:0005515(InterPro)
Cam08g2128 716 SMART tpr_5 512 545 IPR019734 GO:0005515(InterPro)
Cam08g2128 716 SMART tpr_5 318 351 IPR019734 GO:0005515(InterPro)
Cam08g2128 716 SMART tpr_5 573 606 IPR019734 GO:0005515(InterPro)
Cam08g2128 716 SMART tpr_5 677 710 IPR019734 GO:0005515(InterPro)
Cam08g2128 716 SMART tpr_5 607 640 IPR019734 GO:0005515(InterPro)
Cam08g2128 716 Gene3D Tetratricopeptide repeat domain 27 240 IPR011990 GO:0005515(InterPro)
Cam08g2128 716 SUPERFAMILY TPR-like 317 542 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g2128 Cam-Chr8:26663923 Cam11g1690 Cam-Chr11:29572260 3.60E-149 dispersed
Cam08g2128 Cam-Chr8:26663923 Cam07g0121 Cam-Chr7:2409350 1.70E-159 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g2128 K21843 - csv:101209448 1335.09