Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam08g2135 | ATGAGTAATTTTTCGGGTTCTCGTTGTAATAATAGTGGTGATGAATCGGGGTGGACAATGTATTTTGAGGATTCGATTGAGACGGATGGGAGATTTCGGGGGGGTGTGGTGGATTACGGCGGCGGAGAGAAGGAGGAAGAAGAAGGGGATTTGTCGATGATTTCGGATGCGTCGTCGGGGCCGAGGAATGGGTATTATGAGGAGAATAATTGTCAGTCAGTGCGGCGGAGTGGGGGGAAATCGGCGGCGGGGAAAAGTAAAAGGAAACAGGAGATGGGGCGGCGGAACCAACATTCTTGCCTTGATGATACTGCAAGCTCCCCTGTTTTTGGGCTTTCCAAGATCAGAGAGACGAATCCATACAGAAATGAAGCTTTGGTGGAGAATGTAAAAGAATTCTCCCAAACCCATTCTCGAAAACAACATGGGAAGAAACAAACAAGCTTTTTTCAGTCTTCCTCAGTCAAAAAATTGGGCAAGAATGTCTCAGCTGTAAGTGGATGCAATTCCAATTCCACTCTCGCTTTCAGTGAAGCCACCCATTCGGAAATGGAGGACGCCTACGCCAGATCTATCACTGAGGTATTGGATTTCTTTGGGGTTGATCCATCACAAGGTCTCACAGATGATCAGGTTTTACATCATGCTAAACTTTATGGAAAAAACTTGGTACCTGAGGAGAAAAGGGCCCCATTTTGGAAATTGGTTTTGAAGCAGTTTGATGATTTACTAGTGAAGATATTGATTGTTGCAGCAGTTGTTTCTTTCCTTTTGGCTTTGATAAATGGAGAGACAGGTGTAACAGCATTTTTGGAGCCTTCAGTAATTCTAATGATATTGGCTGCAAACGCAGCAGTCGGGGTGATTACGGAAACAAATGCTGAAAAGGCCCTTGTGGAACTACGGGCATACCAGGCAGATATTGCTACTGTGATGAGAAATGGTTGCTTTTCAATACTTCCAGCTACTGAGCTTGTTCCTGGCGATATTGTAGAAGTTGCTGTGGGGTGCAAAATTCCAGCTGATATGAGAATGATTGAGATGCTGACTAATCAACTACGTGTTGATCAAGCAATTCTCACAGGTGAGAGTTGCTCTGTTGAAAAAGAGCTCGAGTCCACAACTGCAGCAAATGCTGTATATCAAGACAAGACAAATATTCTTTTTTCTGGTACAGTGGTGGTTGCTGGCAGGGCACGAGCTATTGTGGTAGGAGTTGGTGCAAATACTGCCATGGGCAATATACGAGATTCTATATTGCAAACGGATGATGAGGTGACACCGTTGAAAAAGAAGCTCGATGAATTTGGTACCTTCCTGGCCAAGGTTATTGCTGGAATTTGTGCACTAGTATGGATAGTGAACATTGGTCACTTTCGTGATCCTTCACATGGTGGGGTTTTGAGTGGTGCAATACATTACTTCAAGATTGCAGTTGCTCTTGCTGTTGCAGCTATTCCTGAAGGACTTCCTGCTGTTGTCACAACGTGTTTGGCTCTTGGCACCAAACGAATGGCACGTCTGAATGCAATTGTGAGGTCTTTGCCATCTGTTGAGACTTTAGGCTGCACTACTGTTATATGTAGTGACAAGACTGGAACTTTGACTACCAATATGATGTCCGTCTCAAAGATTTGTGTGGTCCATTCTGTTTTGCATGGTCCACAACTTTCGGAGTACAATGTCAGCGGTACAACATATGCTCCTGATGGTATTATTTTTGACAGCACGGGAGTACAGCTTGAGTTTCCAGCTCAATTGCCTTGTATTCTACATTTGGCGATGGGGTCTGCCCTCTGCAACGAGTCTACCTTGCAATATAACCCAGACAAGGGAAGCTACGAAAAAATTGGTGAATCAACTGAAGTAGCACTGCGTGTCTTTGCTGAAAAGGTTGGTCTTCCTGGTTTTACTTCTATGCCTTCTGCTCTAAATATGCTCAGCAAGCATGAGCGTGCATCCTATTGTAACCACCATTGGGAGAGCCAGTTCAAAAAGATTTCTGTATTGGAATTTTCTCGCAATCGCAAGATGATGAGCATTTTATGTAGCAGAAACCAGTCACATATTCTATTCTCCAAGGGTGCTCCTGAGAGCATTATTTCAAGATGCTCAAGCATCCTTTGTAATGAAGATGGTTCCACCAGTGTTTTAACTTCTACTATTCGCACTGAACTGGAAGCAAGATTTCAAAGTTTTGCAGGAAATGAAATGCTTAGGTGCCTGGCTATAGCATTCAAATTGCTTCCCTTAAGTCAGCAGAGTTTATCCTTTGATGATGAGCAAGATCTAACATTCATTGGGTTGGTTGGAATGCTTGATCCACCGAGAGAGGAAGTGAGAAATGCTATGCTTTCATGCATGACTGCTGGCATACGTGTTATAGTTGTAACTGGGGACAATAAGTCAACTGCTGAATCACTCTGTCGCAAGATTGGTGCTTTTGACCACTTGGTAGATCTAACTGGTCATTCTTACACTGCTTCCGAATTTGAAGAGCTACCTGCAATGCAACAAACAATGGCATTGCAACGAATGGCACTCTTCACCAGGGTTGAACCTTCTCACAAGAGAATGCTCGTGGAGGCCTTACAACATCAGAATGAAGTGGTTGCTATGACAGGCGATGGCGTCAATGATGCACCTGCACTGAAGAAAGCCGACATTGGAATTGCCATGGGTTCAGGAACAGCAGTTGCCAAGAGTGCTTCTGATATGGTCTTAGCTGATGACAATTTTGCTTCTATTGTTGCGGCTGTTGCAGAGGGCAGAGCTATTTACAATAATACTAAGCAGTTCATCAGATACATGATCTCTTCAAATATTGGTGAAGTAGTCTGTATATTTGTGGCAGCTGTTCTTGGAATACCAGAGACACTTGCCCCTGTGCAACTTCTTTGGGTCAACTTGGTCACTGATGGGTTGCCTGCAACTGCAATTGGATTTAACAAGCAAGACTCTGATGTAATGAAAGCTAAGCCTCGAAAGGTGAATGAAGCTGTGGTGACTGGGTGGTTGTTCTTTCGTTATTTGGTAATCGGAGCCTATGTTGGTCTTGCAACAATTGCTGGCTTCATATGGTGGTTTATATACTCGGACACTGGTCCTAAGCTAAATTACTCTGAGTTGATGAATTTTGATACTTGCTCAACCCGAGAGACAACATACTCTTGCAGTATATTCGAGGATCGGCATCCATCGACTGTGTCTATGACTGTGCTTGTTGTTGTCGAGATGTTCAATGCTTTAAATAATCTAAGTGAAAATCAATCTCTTCTTGTTATCCCTCCCTGGAGTAATTTATGGCTCGTTGCCTCCATTGTCATAACCATGATCCTTCACATGCTTATTATGTATGTGCAACCTCTCGCTGTTCTTTTCTCTGTAACGCCATTATCTTGGGCTGAATGGACGATGGTTTTGTATCTTTCATTTCCTGTTATAATTATTGATGAGGTACTGAAATGCTTTTCACGACGCTCTAGTGGCACTGGCAGGTTGAGGCTTCCATTCAGATTCAGAAGACATGATTTACTTCCAAAGAAGGAATTGCATGACAACACTCTAAGCTACCGGTCGGTTAATAATATCACATCACAACACAACAATCATGAAGAGAAAGCGGCAAAGATGAATGTGCTGGAAAAAAGAGGAATTTGGTCAACCCCATCATTTGAATATCTCTCCTTGTGCCCCCACAAGAATCTCCAGAAGATCTTAAGGGATAACAAAGGAAATAAGAACCATGTTCATGTCAAAATCTTTGAAATGAAACTCATGACCCCCCCACCATCCATGGAAAGTTGGAAACGCTGCACACCCCCAGCCCTAATTCTAAGAGAAATCAAGGACTTTGATCTCACTCCCAACAATCTTCCATCAAGTAAGGATCACTCTCCTCTCAAATATTCATCTATTCAACCACTCTTTCCTTCTCTCCAAAGCACACTACCTCTTCGATAG | 3963 | 43.22 | MSNFSGSRCNNSGDESGWTMYFEDSIETDGRFRGGVVDYGGGEKEEEEGDLSMISDASSGPRNGYYEENNCQSVRRSGGKSAAGKSKRKQEMGRRNQHSCLDDTASSPVFGLSKIRETNPYRNEALVENVKEFSQTHSRKQHGKKQTSFFQSSSVKKLGKNVSAVSGCNSNSTLAFSEATHSEMEDAYARSITEVLDFFGVDPSQGLTDDQVLHHAKLYGKNLVPEEKRAPFWKLVLKQFDDLLVKILIVAAVVSFLLALINGETGVTAFLEPSVILMILAANAAVGVITETNAEKALVELRAYQADIATVMRNGCFSILPATELVPGDIVEVAVGCKIPADMRMIEMLTNQLRVDQAILTGESCSVEKELESTTAANAVYQDKTNILFSGTVVVAGRARAIVVGVGANTAMGNIRDSILQTDDEVTPLKKKLDEFGTFLAKVIAGICALVWIVNIGHFRDPSHGGVLSGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVSKICVVHSVLHGPQLSEYNVSGTTYAPDGIIFDSTGVQLEFPAQLPCILHLAMGSALCNESTLQYNPDKGSYEKIGESTEVALRVFAEKVGLPGFTSMPSALNMLSKHERASYCNHHWESQFKKISVLEFSRNRKMMSILCSRNQSHILFSKGAPESIISRCSSILCNEDGSTSVLTSTIRTELEARFQSFAGNEMLRCLAIAFKLLPLSQQSLSFDDEQDLTFIGLVGMLDPPREEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDHLVDLTGHSYTASEFEELPAMQQTMALQRMALFTRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPETLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKAKPRKVNEAVVTGWLFFRYLVIGAYVGLATIAGFIWWFIYSDTGPKLNYSELMNFDTCSTRETTYSCSIFEDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVIPPWSNLWLVASIVITMILHMLIMYVQPLAVLFSVTPLSWAEWTMVLYLSFPVIIIDEVLKCFSRRSSGTGRLRLPFRFRRHDLLPKKELHDNTLSYRSVNNITSQHNNHEEKAAKMNVLEKRGIWSTPSFEYLSLCPHKNLQKILRDNKGNKNHVHVKIFEMKLMTPPPSMESWKRCTPPALILREIKDFDLTPNNLPSSKDHSPLKYSSIQPLFPSLQSTLPLR | 1320 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 26709068 | 26739074 | + | CaPI482276_08g021350.1 | Cam08g2135 | 134186 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam08g2135 | 1320 | Pfam | E1-E2 ATPase | 305 | 507 | - | - | |
| Cam08g2135 | 1320 | FunFam | Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 | 870 | 1162 | - | - | |
| Cam08g2135 | 1320 | Gene3D | - | 525 | 918 | IPR023214 | - | |
| Cam08g2135 | 1320 | SUPERFAMILY | HAD-like | 761 | 922 | IPR036412 | - | |
| Cam08g2135 | 1320 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 184 | 1161 | IPR023298 | - | |
| Cam08g2135 | 1320 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 535 | 772 | IPR023299 | GO:0000166(InterPro) | |
| Cam08g2135 | 1320 | SFLD | p-type atpase | 509 | 926 | IPR044492 | - | |
| Cam08g2135 | 1320 | Gene3D | - | 205 | 420 | - | - | |
| Cam08g2135 | 1320 | PRINTS | P-type cation-transporting ATPase superfamily signature | 356 | 370 | - | - | |
| Cam08g2135 | 1320 | PRINTS | P-type cation-transporting ATPase superfamily signature | 528 | 542 | - | - | |
| Cam08g2135 | 1320 | PRINTS | P-type cation-transporting ATPase superfamily signature | 768 | 779 | - | - | |
| Cam08g2135 | 1320 | PRINTS | P-type cation-transporting ATPase superfamily signature | 874 | 893 | - | - | |
| Cam08g2135 | 1320 | PRINTS | P-type cation-transporting ATPase superfamily signature | 790 | 800 | - | - | |
| Cam08g2135 | 1320 | PRINTS | P-type cation-transporting ATPase superfamily signature | 897 | 909 | - | - | |
| Cam08g2135 | 1320 | NCBIfam | calcium-translocating P-type ATPase, SERCA-type | 236 | 1029 | IPR005782 | GO:0005388(InterPro)|GO:0006816(InterPro)|GO:0016020(InterPro) | |
| Cam08g2135 | 1320 | CDD | P-type_ATPase_SERCA | 188 | 1159 | - | - | |
| Cam08g2135 | 1320 | Pfam | Cation transporting ATPase, C-terminus | 958 | 1157 | IPR006068 | - | |
| Cam08g2135 | 1320 | FunFam | Sodium/potassium-transporting ATPase subunit alpha | 767 | 913 | - | - | |
| Cam08g2135 | 1320 | Pfam | Cation transporter/ATPase, N-terminus | 188 | 255 | IPR004014 | - | |
| Cam08g2135 | 1320 | SFLD | Haloacid Dehalogenase | 509 | 926 | - | - | |
| Cam08g2135 | 1320 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 191 | 1166 | - | GO:0005388(PANTHER)|GO:0006874(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0070588(PANTHER) | |
| Cam08g2135 | 1320 | FunFam | Calcium-transporting ATPase, putative | 393 | 524 | - | - | |
| Cam08g2135 | 1320 | SMART | Cation_ATPase_N_a_2 | 186 | 260 | IPR004014 | - | |
| Cam08g2135 | 1320 | MobiDBLite | consensus disorder prediction | 84 | 98 | - | - | |
| Cam08g2135 | 1320 | FunFam | Calcium-transporting ATPase | 295 | 420 | - | - | |
| Cam08g2135 | 1320 | FunFam | Calcium-transporting ATPase | 538 | 775 | - | - | |
| Cam08g2135 | 1320 | Gene3D | - | 538 | 775 | IPR023299 | GO:0000166(InterPro) | |
| Cam08g2135 | 1320 | MobiDBLite | consensus disorder prediction | 31 | 105 | - | - | |
| Cam08g2135 | 1320 | MobiDBLite | consensus disorder prediction | 56 | 79 | - | - | |
| Cam08g2135 | 1320 | Pfam | haloacid dehalogenase-like hydrolase | 765 | 888 | - | - | |
| Cam08g2135 | 1320 | Pfam | Cation transport ATPase (P-type) | 598 | 707 | - | - | |
| Cam08g2135 | 1320 | SUPERFAMILY | Calcium ATPase, transduction domain A | 307 | 418 | IPR008250 | - | |
| Cam08g2135 | 1320 | NCBIfam | HAD-IC family P-type ATPase | 844 | 962 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cam08g2135 | 1320 | NCBIfam | HAD-IC family P-type ATPase | 275 | 550 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cam08g2135 | 1320 | PRINTS | H+-transporting ATPase (proton pump) signature | 846 | 862 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cam08g2135 | 1320 | PRINTS | H+-transporting ATPase (proton pump) signature | 874 | 890 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cam08g2135 | 1320 | PRINTS | H+-transporting ATPase (proton pump) signature | 905 | 930 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cam08g2135 | 1320 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 530 | 536 | IPR018303 | - | |
| Cam08g2135 | 1320 | Gene3D | - | 238 | 1159 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam08g2135 | Cam-Chr8:26709068 | Cam09g0723 | Cam-Chr9:7275488 | 6.10E-86 | dispersed | |
| Cam03g0179 | Cam-Chr3:2741407 | Cam08g2135 | Cam-Chr8:26709068 | 7.80E-225 | transposed | |
| Cam01g1806 | Cam-Chr1:31610617 | Cam08g2135 | Cam-Chr8:26709068 | 9.50E-80 | wgd | |
| Cam05g2265 | Cam-Chr5:30795155 | Cam08g2135 | Cam-Chr8:26709068 | 1.80E-13 | wgd | |
| Cam05g1920 | Cam-Chr5:28132621 | Cam08g2135 | Cam-Chr8:26709068 | 1.30E-58 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam08g2135 | K05853 | - | csv:101211345 | 1902.87 |