Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g2137 ATGCCGATGTACCAGCCTGCTACTTGGAGAGAAGGGGATCCGAAGCTCGTCGTCGGCTGCGGTGCGCAGATTCTAGATCTGGAAACTGTGGTCAAAGATGGGATTCTCGGCGGAGGCGGGGGGATAATCTGCGGCGGCGTTGGCGGTGGCGGTGGAGAGAAATTGGATCTGAAGGAGATGATTGAGGAGTTGGAATCGTCCATAGAGGTTCCATCGGTGTTCATTTGCCCAATCTCGCTCGAACCCATGCAAGATCCAGTGACCCTCTGCTCCGGGCAGACCTACGAGCGTTCCAACATTCTGAAATGGTTCTCTTTAGGGCATTTAACTTGTCCCACAACAATGCAAGAGCTTTGGGATGATTCCGTCACACCGAATCGGACTCTTCACCAGTTGATTCACACCTGGTTTTCGCAAAAGTACTTAGCATTGAAGAAAAGATCAGAGGATGTGCAGGGGAGAGTTTTAGAGCTTTTGGATTCGTTGAAGAAGGTCAAGGGTCAAGCTAGGGTTCAGTCCCTTAAAGATCTCCGACATGTCGTCACTACCCATTCCTCCGCCAAGAAGATGGTGGTCGACAACGGCGGTGTCGCTCTAATCTCTTCTCTTTTGGGTTCTTTCACTTCCCACGCAGTTGGGTCCGAAGCCGTGGGAATCCTTGTGAATTTGGATCTCGATTCAGAGTTGAAGAAGAATCTGATTCAACCCACCAGAATTTCCCTAATTGCAGATATTTTAAACGAAGGGTCCATCGAAACCAAGATTAATTGCACGAAATTCATCAAGATGTTGATTGTGGGTGAGGATTTAAGAACAGAGAACGTTTCAAGTCTAAGTCTCCTCGTCGGATTGTTGAGAATGGTGAAGGATCAGAGATACTCAAATGGTGTAACCGCGGGACTCAGTTTACTCCGAACGCTCTGTTCAAACGAACAAATCAGGAAGCAACTCGTCAGCATCGGCGCCGTCGCGAAACTCGGCGGCGCCCTCTCTAACTTAAACGCCGATTGTTTGGAAGCGGCGCTTTATATTCTCGACGTTTTGTCATCCCTTCCGGAAGGGAGATTAGCGTTGAAGAATTGTGAAGATACGATTAGAAATTTGGTGAAATTGTTGATGAAAGTATCAGAGATTTGTACTCAATTTGCGTTGTCGATTTTATGGGCGGTGTTTAAGCTAGCGCCGGAGGAATGTGCGATGCTGGCGGTGGAGGCTGGATTGGCGGCGAAATTGCTGCTTGTAATCCAAAGTGGGTGCAATCCAGAGCTGAAACAGAGATCTGCAGAGCTATTGAAATTGTGTAGTCTAAATTACCCTGATTCAATGTTCATTTCTAAATGTAAGCTTACGAGAACTATACAATAA 1365 47.33 MPMYQPATWREGDPKLVVGCGAQILDLETVVKDGILGGGGGIICGGVGGGGGEKLDLKEMIEELESSIEVPSVFICPISLEPMQDPVTLCSGQTYERSNILKWFSLGHLTCPTTMQELWDDSVTPNRTLHQLIHTWFSQKYLALKKRSEDVQGRVLELLDSLKKVKGQARVQSLKDLRHVVTTHSSAKKMVVDNGGVALISSLLGSFTSHAVGSEAVGILVNLDLDSELKKNLIQPTRISLIADILNEGSIETKINCTKFIKMLIVGEDLRTENVSSLSLLVGLLRMVKDQRYSNGVTAGLSLLRTLCSNEQIRKQLVSIGAVAKLGGALSNLNADCLEAALYILDVLSSLPEGRLALKNCEDTIRNLVKLLMKVSEICTQFALSILWAVFKLAPEECAMLAVEAGLAAKLLLVIQSGCNPELKQRSAELLKLCSLNYPDSMFISKCKLTRTIQ 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26746835 26748199 + CaPI482276_08g021370.1 Cam08g2137 134188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g2137 454 SUPERFAMILY RING/U-box 66 140 - -
Cam08g2137 454 SUPERFAMILY ARM repeat 158 440 IPR016024 -
Cam08g2137 454 CDD RING-Ubox_PUB 71 123 IPR045210 -
Cam08g2137 454 ProSiteProfiles U-box domain profile. 69 143 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam08g2137 454 PANTHER WDSAM1 PROTEIN 66 447 IPR045185 GO:0061630(InterPro)
Cam08g2137 454 Gene3D - 143 452 IPR011989 -
Cam08g2137 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 142 IPR013083 -
Cam08g2137 454 SMART Ubox_2 73 136 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam08g2137 454 Pfam U-box domain 70 140 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2861 Cam-Chr5:35619742 Cam08g2137 Cam-Chr8:26746835 1.30E-165 dispersed
Cam08g0984 Cam-Chr8:15823578 Cam08g2137 Cam-Chr8:26746835 2.20E-06 dispersed
Cam08g2137 Cam-Chr8:26746835 Cam01g1597 Cam-Chr1:29485252 4.90E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g2137 - - - 0.0