Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g2145 ATGAAAATGGAGGTTACTTCTTCTGATCATCCTTACAATCAACACCATTCTCACTCTGCTTCAAATCCTTTCTACTTATCTCCTCATTTCAACCACAACAATACTGAAATCTTTTATGGAATTCCTGATAATTCCTCTCTTCACCATCACTCTGCTGCTGCTTCCCTCTCTGTAATGCCTCTGAAATCTGATGGCTCACTCTGTATTATGGAAGCCCTTTCAAGATCTCAAACCGAAGGGATGGTACCGAGTTCTTCACCGAAGCTTGAGGATTTTCTTGGTGGTGCAACAATGGGGAATCGAGGAGGCTATTTCAATCAAAATGCTGAATCTGAAACCGACAAGGAACATTCTTTGGACCTTCTTCACAGACCCATTAGACAAAATCAACAGATTTTAATTCAAAATTCAAATCAATACTATTCTGGGTTAGTTCCATCTTCCATTGGAATTGGAACTTGCGATCCCCAAATTCTTCCAGCTAATGACGACGAAATCCCTTGTCTTAGAAACTGGGTTTCTCGTTCTCACTACTCCGCTACACATAATACTCTGGAGCAGCATATTACCGGCGGCGCTCTTGTGAATGACGGAAGCGGTGGCGGCTCTGCTTCCATTGGCGGAATGAGCTGCGGGGAATTGCAGTCGTTGAGTTTGTCGATGAGTCCAGGTTCTCAATCGAGCTCTTTCACGGCTCCCGGCCAGATCTCCCCTACTGGAGGCGACGGCGGGGCCGTGGAAACTAAAAAAAGAGGCGCCGGAAAACTCTGCCAGAAACAACCCGTTCACCGCAAGTCCATTGATACTTTTGGCCAACGAACCTCCCAATATCGTGGCGTCACCAGACATAGATGGACCGGGAGATATGAAGCTCATCTGTGGGATAATAGTTGCAAGAAAGAAGGGCAAACCAGAAAAGGAAGACAAGTGTATCTTGGGGGATATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATCTTGCTGCCCTCAAGTACTGGGGACCCTCTACCCATATAAATTTTCCATTGGAAAATTATCAGACTGAATTAGAAGAAATGAAGAATATGAGCCGCCAGGAATATGTTGCCCACTTGAGAAGAAAAAGCAGTGGCTTTTCAAGGGGCGCTTCTGTTTTCCGTGGAGTCACAAGACATCACCAACATGGAAGATGGCAAGCAAGGATTGGTAGAGTTGCTGGAAACAAAGACCTTTATCTTGGGACATTTAGCACGCAAGAGGAAGCGGCTGAGGCTTATGACATAGCAGCAATCAAATTCCGCGGTGTAAATGCTGTCACCAACTTTGACATTTCCAGATATGATGTCGAGAAAATCATGGCTAGTAATACTCTACTGGCAGGCGAGCTGGCTAGAAGGAACAAGGACGTCGAACCAAGCAGTGATACGGCCGTCGTTCCCTACGACTCCTCGGTTGCGGCAAACAACAATGTCGGGATCGGGATTGGGATTGAAATCAATCCCGATGACAACGGTGCGAATGGAAATGGTAATGATTGGAAGATGGCATTGTATCAAAATCCATCACATCAACAACAGGTTTGTGTTGCGGAATCATTGGATCATCATCACAATAAATCCATGATCGTAACGGGAGGTTATCGAAACACTTCGTTCTCGATGGCATTGCAGGATTTGATTGGAATTGAATCGTTGAATGCTAGTACTCATGGGATTGAGGATGATGTAAGCAAACAAGTGACTCATTTTTCAAATTCGTCGTCGTTGGTGACGAGTTTGAGTAGCTCGAGAGAAGGTAGTCCTGATAAGACGAATCTGTCAATGCCGTTTGGAAAACCCCCACCCTTGATGGCATCAAAGCTAATTGGTGCAACGAGCGGGGTTGGGGTCGGAGTCGGTGCTTGGTACCCATCACCACAGCAGTTGAGGCCAACAGCGGCCATTTCAATGGCACATTTGCCTGTTTTTGCAACTTGGAATGACACTTAA 1968 45.58 MKMEVTSSDHPYNQHHSHSASNPFYLSPHFNHNNTEIFYGIPDNSSLHHHSAAASLSVMPLKSDGSLCIMEALSRSQTEGMVPSSSPKLEDFLGGATMGNRGGYFNQNAESETDKEHSLDLLHRPIRQNQQILIQNSNQYYSGLVPSSIGIGTCDPQILPANDDEIPCLRNWVSRSHYSATHNTLEQHITGGALVNDGSGGGSASIGGMSCGELQSLSLSMSPGSQSSSFTAPGQISPTGGDGGAVETKKRGAGKLCQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASVFRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVEKIMASNTLLAGELARRNKDVEPSSDTAVVPYDSSVAANNNVGIGIGIEINPDDNGANGNGNDWKMALYQNPSHQQQVCVAESLDHHHNKSMIVTGGYRNTSFSMALQDLIGIESLNASTHGIEDDVSKQVTHFSNSSSLVTSLSSSREGSPDKTNLSMPFGKPPPLMASKLIGATSGVGVGVGAWYPSPQQLRPTAAISMAHLPVFATWNDT 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26838530 26841498 + CaPI482276_08g021450.1 Cam08g2145 134196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g2145 655 ProSiteProfiles AP2/ERF domain profile. 378 436 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g2145 655 SUPERFAMILY DNA-binding domain 275 344 IPR016177 GO:0003677(InterPro)
Cam08g2145 655 CDD AP2 377 438 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g2145 655 Gene3D AP2/ERF domain 378 438 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g2145 655 Gene3D AP2/ERF domain 275 344 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g2145 655 MobiDBLite consensus disorder prediction 217 236 - -
Cam08g2145 655 FunFam AP2-like ethylene-responsive transcription factor ANT 275 344 - -
Cam08g2145 655 MobiDBLite consensus disorder prediction 217 258 - -
Cam08g2145 655 CDD AP2 275 342 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g2145 655 Pfam AP2 domain 377 428 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g2145 655 Pfam AP2 domain 276 334 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g2145 655 MobiDBLite consensus disorder prediction 1 20 - -
Cam08g2145 655 SUPERFAMILY DNA-binding domain 377 438 IPR016177 GO:0003677(InterPro)
Cam08g2145 655 PRINTS Ethylene responsive element binding protein signature 418 438 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g2145 655 PRINTS Ethylene responsive element binding protein signature 277 288 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g2145 655 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 157 498 - -
Cam08g2145 655 SMART rav1_2 378 442 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g2145 655 SMART rav1_2 276 348 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g2145 655 ProSiteProfiles AP2/ERF domain profile. 276 342 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g2145 655 FunFam AP2-like ethylene-responsive transcription factor 377 438 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2850 Cam-Chr5:35563139 Cam08g2145 Cam-Chr8:26838530 2.40E-139 dispersed
Cam08g2145 Cam-Chr8:26838530 Cam10g0726 Cam-Chr10:12128239 1.10E-85 dispersed
Cam07g1158 Cam-Chr7:25946112 Cam08g2145 Cam-Chr8:26838530 3.00E-111 transposed
Cam11g0921 Cam-Chr11:13512729 Cam08g2145 Cam-Chr8:26838530 1.30E-92 transposed
Cam01g1825 Cam-Chr1:31775597 Cam08g2145 Cam-Chr8:26838530 4.80E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52492 PF00847 AP2 1.50E-13 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g2145 K09285 - csv:101212797 1161.36