Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam08g2145 | ATGAAAATGGAGGTTACTTCTTCTGATCATCCTTACAATCAACACCATTCTCACTCTGCTTCAAATCCTTTCTACTTATCTCCTCATTTCAACCACAACAATACTGAAATCTTTTATGGAATTCCTGATAATTCCTCTCTTCACCATCACTCTGCTGCTGCTTCCCTCTCTGTAATGCCTCTGAAATCTGATGGCTCACTCTGTATTATGGAAGCCCTTTCAAGATCTCAAACCGAAGGGATGGTACCGAGTTCTTCACCGAAGCTTGAGGATTTTCTTGGTGGTGCAACAATGGGGAATCGAGGAGGCTATTTCAATCAAAATGCTGAATCTGAAACCGACAAGGAACATTCTTTGGACCTTCTTCACAGACCCATTAGACAAAATCAACAGATTTTAATTCAAAATTCAAATCAATACTATTCTGGGTTAGTTCCATCTTCCATTGGAATTGGAACTTGCGATCCCCAAATTCTTCCAGCTAATGACGACGAAATCCCTTGTCTTAGAAACTGGGTTTCTCGTTCTCACTACTCCGCTACACATAATACTCTGGAGCAGCATATTACCGGCGGCGCTCTTGTGAATGACGGAAGCGGTGGCGGCTCTGCTTCCATTGGCGGAATGAGCTGCGGGGAATTGCAGTCGTTGAGTTTGTCGATGAGTCCAGGTTCTCAATCGAGCTCTTTCACGGCTCCCGGCCAGATCTCCCCTACTGGAGGCGACGGCGGGGCCGTGGAAACTAAAAAAAGAGGCGCCGGAAAACTCTGCCAGAAACAACCCGTTCACCGCAAGTCCATTGATACTTTTGGCCAACGAACCTCCCAATATCGTGGCGTCACCAGACATAGATGGACCGGGAGATATGAAGCTCATCTGTGGGATAATAGTTGCAAGAAAGAAGGGCAAACCAGAAAAGGAAGACAAGTGTATCTTGGGGGATATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATCTTGCTGCCCTCAAGTACTGGGGACCCTCTACCCATATAAATTTTCCATTGGAAAATTATCAGACTGAATTAGAAGAAATGAAGAATATGAGCCGCCAGGAATATGTTGCCCACTTGAGAAGAAAAAGCAGTGGCTTTTCAAGGGGCGCTTCTGTTTTCCGTGGAGTCACAAGACATCACCAACATGGAAGATGGCAAGCAAGGATTGGTAGAGTTGCTGGAAACAAAGACCTTTATCTTGGGACATTTAGCACGCAAGAGGAAGCGGCTGAGGCTTATGACATAGCAGCAATCAAATTCCGCGGTGTAAATGCTGTCACCAACTTTGACATTTCCAGATATGATGTCGAGAAAATCATGGCTAGTAATACTCTACTGGCAGGCGAGCTGGCTAGAAGGAACAAGGACGTCGAACCAAGCAGTGATACGGCCGTCGTTCCCTACGACTCCTCGGTTGCGGCAAACAACAATGTCGGGATCGGGATTGGGATTGAAATCAATCCCGATGACAACGGTGCGAATGGAAATGGTAATGATTGGAAGATGGCATTGTATCAAAATCCATCACATCAACAACAGGTTTGTGTTGCGGAATCATTGGATCATCATCACAATAAATCCATGATCGTAACGGGAGGTTATCGAAACACTTCGTTCTCGATGGCATTGCAGGATTTGATTGGAATTGAATCGTTGAATGCTAGTACTCATGGGATTGAGGATGATGTAAGCAAACAAGTGACTCATTTTTCAAATTCGTCGTCGTTGGTGACGAGTTTGAGTAGCTCGAGAGAAGGTAGTCCTGATAAGACGAATCTGTCAATGCCGTTTGGAAAACCCCCACCCTTGATGGCATCAAAGCTAATTGGTGCAACGAGCGGGGTTGGGGTCGGAGTCGGTGCTTGGTACCCATCACCACAGCAGTTGAGGCCAACAGCGGCCATTTCAATGGCACATTTGCCTGTTTTTGCAACTTGGAATGACACTTAA | 1968 | 45.58 | MKMEVTSSDHPYNQHHSHSASNPFYLSPHFNHNNTEIFYGIPDNSSLHHHSAAASLSVMPLKSDGSLCIMEALSRSQTEGMVPSSSPKLEDFLGGATMGNRGGYFNQNAESETDKEHSLDLLHRPIRQNQQILIQNSNQYYSGLVPSSIGIGTCDPQILPANDDEIPCLRNWVSRSHYSATHNTLEQHITGGALVNDGSGGGSASIGGMSCGELQSLSLSMSPGSQSSSFTAPGQISPTGGDGGAVETKKRGAGKLCQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASVFRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVEKIMASNTLLAGELARRNKDVEPSSDTAVVPYDSSVAANNNVGIGIGIEINPDDNGANGNGNDWKMALYQNPSHQQQVCVAESLDHHHNKSMIVTGGYRNTSFSMALQDLIGIESLNASTHGIEDDVSKQVTHFSNSSSLVTSLSSSREGSPDKTNLSMPFGKPPPLMASKLIGATSGVGVGVGAWYPSPQQLRPTAAISMAHLPVFATWNDT | 655 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 26838530 | 26841498 | + | CaPI482276_08g021450.1 | Cam08g2145 | 134196 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam08g2145 | 655 | ProSiteProfiles | AP2/ERF domain profile. | 378 | 436 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam08g2145 | 655 | SUPERFAMILY | DNA-binding domain | 275 | 344 | IPR016177 | GO:0003677(InterPro) | |
Cam08g2145 | 655 | CDD | AP2 | 377 | 438 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam08g2145 | 655 | Gene3D | AP2/ERF domain | 378 | 438 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam08g2145 | 655 | Gene3D | AP2/ERF domain | 275 | 344 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam08g2145 | 655 | MobiDBLite | consensus disorder prediction | 217 | 236 | - | - | |
Cam08g2145 | 655 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 275 | 344 | - | - | |
Cam08g2145 | 655 | MobiDBLite | consensus disorder prediction | 217 | 258 | - | - | |
Cam08g2145 | 655 | CDD | AP2 | 275 | 342 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam08g2145 | 655 | Pfam | AP2 domain | 377 | 428 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam08g2145 | 655 | Pfam | AP2 domain | 276 | 334 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam08g2145 | 655 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cam08g2145 | 655 | SUPERFAMILY | DNA-binding domain | 377 | 438 | IPR016177 | GO:0003677(InterPro) | |
Cam08g2145 | 655 | PRINTS | Ethylene responsive element binding protein signature | 418 | 438 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam08g2145 | 655 | PRINTS | Ethylene responsive element binding protein signature | 277 | 288 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam08g2145 | 655 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 157 | 498 | - | - | |
Cam08g2145 | 655 | SMART | rav1_2 | 378 | 442 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam08g2145 | 655 | SMART | rav1_2 | 276 | 348 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam08g2145 | 655 | ProSiteProfiles | AP2/ERF domain profile. | 276 | 342 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam08g2145 | 655 | FunFam | AP2-like ethylene-responsive transcription factor | 377 | 438 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam05g2850 | Cam-Chr5:35563139 | Cam08g2145 | Cam-Chr8:26838530 | 2.40E-139 | dispersed | |
Cam08g2145 | Cam-Chr8:26838530 | Cam10g0726 | Cam-Chr10:12128239 | 1.10E-85 | dispersed | |
Cam07g1158 | Cam-Chr7:25946112 | Cam08g2145 | Cam-Chr8:26838530 | 3.00E-111 | transposed | |
Cam11g0921 | Cam-Chr11:13512729 | Cam08g2145 | Cam-Chr8:26838530 | 1.30E-92 | transposed | |
Cam01g1825 | Cam-Chr1:31775597 | Cam08g2145 | Cam-Chr8:26838530 | 4.80E-152 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52492 | PF00847 | AP2 | 1.50E-13 | CL0081 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam08g2145 | K09285 | - | csv:101212797 | 1161.36 |