Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g2153 ATGGAAGATCAGTACAAGGTTCATGGTGATAGGTGTAGGGGAAATTTCTTGTACAATTCAGTACCCGTTTTGGCAACCAATTCTTCATCTCCTGCGGGCAATTTCGTAATTCGTTCCTCTTCTTCAAATGGGAATCAGATCATGGCCGTAAATGCAAATCTCGCCTCCGGTGACTCCAATTATTTTCCTCCGTCCGATCAAGTTGTCAAAGTGGAGCCTCCCACCGTTCAAGTCGGAGCACCGCCGGAGGTGGCGGCAAAACTTACTTCAGTAAGGGAGGAATTCGAGCAGCGGCGGCGGTCTTCGATGGCGTCCACCGAGGGCTCATCAATTGACCCTGAACTTGATCAATTCATGGAAGCTTATTATGGGATGTTGGTGAAGTATAGAGAGGAGTTAACAAGGCCAATTCAAGAAGCTTCAGATTTCATGCACAGAATTGAATCTCAGCTTAATACTCTCTGCAATGGCTCCTTTCAAATCTTAGCATCTGGAACACAAGGGAAGTGCGAAGGAATGGGATCGTCGTCAGAGGAGGAAGAGAAGGGCGGGGAAATGGAAAGAGAGATAGAAGATCAAATCGACCCACGAGCTGAAGAGCGAGAGCTTAAGAATCACTTACTCAAAAAATACAGTGGTTATCTTAGCAGTTTAAAGCAAGAACTTTCCAAGAAAAAGAAGAAAGGAAAGCTCCCTAAAGACGCAAGACAAGAGCTCCTCCGTTGGTGGGAATTGCACAACAAATGGCCATATCCATCGGAGGCAGAAAAGTTGGCACTGGCGGAATCAACTGGGCTTGACCAGAAACAGATAAATAATTGGTTCATAAACCAAAGGAAAAGGCACTGGAAACCTTCTGAGGATGTGCAGTTTATGGGTATGGAGGGGTTTTGTCATCCCAATGCTGCTGCTGCTGCTGCTGCTGCTTTTTACTTTGATGGCCATTTCATGGGTGATTCCCATTATCGTTTGGGTCCATGA 981 45.97 MEDQYKVHGDRCRGNFLYNSVPVLATNSSSPAGNFVIRSSSSNGNQIMAVNANLASGDSNYFPPSDQVVKVEPPTVQVGAPPEVAAKLTSVREEFEQRRRSSMASTEGSSIDPELDQFMEAYYGMLVKYREELTRPIQEASDFMHRIESQLNTLCNGSFQILASGTQGKCEGMGSSSEEEEKGGEMEREIEDQIDPRAEERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQELLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFMGMEGFCHPNAAAAAAAAFYFDGHFMGDSHYRLGP 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26942975 26948535 - CaPI482276_08g021530.1 Cam08g2153 134204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g2153 326 CDD homeodomain 234 286 IPR001356 GO:0003677(InterPro)
Cam08g2153 326 SMART ELK_2 202 223 IPR005539 GO:0003677(InterPro)
Cam08g2153 326 SMART ELK_2 114 134 IPR005539 GO:0003677(InterPro)
Cam08g2153 326 Pfam KNOX2 domain 112 155 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cam08g2153 326 SUPERFAMILY Homeodomain-like 223 294 IPR009057 -
Cam08g2153 326 SMART HOX_1 224 289 IPR001356 GO:0003677(InterPro)
Cam08g2153 326 ProSiteProfiles ELK domain profile. 202 222 IPR005539 GO:0003677(InterPro)
Cam08g2153 326 SMART KNOX2_2 105 156 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cam08g2153 326 Pfam ELK domain 202 223 IPR005539 GO:0003677(InterPro)
Cam08g2153 326 Gene3D - 219 292 - -
Cam08g2153 326 MobiDBLite consensus disorder prediction 166 197 - -
Cam08g2153 326 ProSiteProfiles 'Homeobox' domain profile. 222 285 IPR001356 GO:0003677(InterPro)
Cam08g2153 326 ProSitePatterns 'Homeobox' domain signature. 260 283 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cam08g2153 326 Pfam Homeobox KN domain 242 281 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam08g2153 326 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 57 293 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam08g2153 326 MobiDBLite consensus disorder prediction 174 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2746 Cam-Chr5:34728066 Cam08g2153 Cam-Chr8:26942975 1.20E-64 dispersed
Cam08g1818 Cam-Chr8:24258528 Cam08g2153 Cam-Chr8:26942975 5.80E-23 dispersed
Cam08g2153 Cam-Chr8:26942975 Cam08g2251 Cam-Chr8:27644182 1.90E-33 dispersed
Cam05g1932 Cam-Chr5:28245587 Cam08g2153 Cam-Chr8:26942975 8.00E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52495 PF03791 KNOX2 2.50E-23 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g2153 - - - 0.0