Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam08g2154 | ATGATCACCGAATCAATGCTCCTCAATCCGACGGCTCACATTTCATCCTGGGACTCCCTCGACGATCCCGCCGCCGCAATCCCTTCTTATTTCACCGCCGGTCCCGTGTCGCCCCTCGATTCGCCCACGGCGGCGCTCATGGACTTCGATTCATCCTTCTGGGAAGATCCAGACTTGCCGTCGGCTGTGGACGCCTTCTCCTGCGACCAGTTCCGTATGTATGAGTTCAAAGTCCGCACGTGCGCACGTGGGAGGTCGCACGATTGGACTAAATGTCCGTACGCTCACACCGGCGAGAAGGCTCGCCGCCGAGATCCGAGGAAGTTCAACTATTCCGGCACAGAGTGCCCGGATTTACGCCATGGGTGTTGTAAAAAAGGAGACGCTTGTGAGTACGCTCATGGAGTTTTCGAAAGTTGGCTTCACCCCGACCGGTACCGGACTCAACCGTGCCGTGACGGAACCGGATGCCGACGACGGGTCTGTTTCTTCGCTCACTCGTCGGAGCAGCTCCGGATTCCGGGGAAACAGAGTCTCAGATCTCCACGGGCGAGAGAAATCGCTGTCCCTGCTGTATCATCGCCGACGTCGATCCTAATGTCGCCGTCATCGGACTCACCGCCTATGTCTCCGATCAGCCCTGTAATCAGCGGCGGCGAATCGTTCAGTAGATTAGTCGCATTGATGCACAGTTTTCACCTGGACGAACTGAAAACGAATCCAGCCGTCTCCGGCTTCAGTCCAAGTCTCCGGCGGAACTCCGGCGCATTTGATCTGTGGGACAGAGAAAATGAAGAAGAACCAGCAATGGAGAGAGTAGAATCAGGGAGAAACCTACGAGCCCAAATGTACGCGAAATTAATGAGAGAGAATTCAGTGGACCGAGTCCGGCCACTGATATCGGCCGGATCACGGAACTAA | 921 | 55.92 | MITESMLLNPTAHISSWDSLDDPAAAIPSYFTAGPVSPLDSPTAALMDFDSSFWEDPDLPSAVDAFSCDQFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGTECPDLRHGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCRRRVCFFAHSSEQLRIPGKQSLRSPRAREIAVPAVSSPTSILMSPSSDSPPMSPISPVISGGESFSRLVALMHSFHLDELKTNPAVSGFSPSLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLISAGSRN | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 26966745 | 26967665 | + | CaPI482276_08g021540.1 | Cam08g2154 | 134205 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam08g2154 | 306 | FunFam | Zinc finger CCCH domain-containing protein 66 | 68 | 136 | - | - | |
| Cam08g2154 | 306 | Gene3D | - | 107 | 178 | - | - | |
| Cam08g2154 | 306 | ProSiteProfiles | Zinc finger C3H1-type profile. | 110 | 137 | IPR000571 | GO:0046872(InterPro) | |
| Cam08g2154 | 306 | PANTHER | UNKEMPT FAMILY MEMBER | 52 | 237 | IPR045234 | - | |
| Cam08g2154 | 306 | SMART | c3hfinal6 | 110 | 136 | IPR000571 | GO:0046872(InterPro) | |
| Cam08g2154 | 306 | SMART | c3hfinal6 | 145 | 168 | IPR000571 | GO:0046872(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam08g2154 | Cam-Chr8:26966745 | Cam11g0200 | Cam-Chr11:3522594 | 2.20E-63 | dispersed | |
| Cam03g1606 | Cam-Chr3:31060957 | Cam08g2154 | Cam-Chr8:26966745 | 4.10E-67 | wgd | |
| Cam05g1935 | Cam-Chr5:28293110 | Cam08g2154 | Cam-Chr8:26966745 | 1.80E-77 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam08g2154 | - | - | - | 0.0 |