Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g2154 ATGATCACCGAATCAATGCTCCTCAATCCGACGGCTCACATTTCATCCTGGGACTCCCTCGACGATCCCGCCGCCGCAATCCCTTCTTATTTCACCGCCGGTCCCGTGTCGCCCCTCGATTCGCCCACGGCGGCGCTCATGGACTTCGATTCATCCTTCTGGGAAGATCCAGACTTGCCGTCGGCTGTGGACGCCTTCTCCTGCGACCAGTTCCGTATGTATGAGTTCAAAGTCCGCACGTGCGCACGTGGGAGGTCGCACGATTGGACTAAATGTCCGTACGCTCACACCGGCGAGAAGGCTCGCCGCCGAGATCCGAGGAAGTTCAACTATTCCGGCACAGAGTGCCCGGATTTACGCCATGGGTGTTGTAAAAAAGGAGACGCTTGTGAGTACGCTCATGGAGTTTTCGAAAGTTGGCTTCACCCCGACCGGTACCGGACTCAACCGTGCCGTGACGGAACCGGATGCCGACGACGGGTCTGTTTCTTCGCTCACTCGTCGGAGCAGCTCCGGATTCCGGGGAAACAGAGTCTCAGATCTCCACGGGCGAGAGAAATCGCTGTCCCTGCTGTATCATCGCCGACGTCGATCCTAATGTCGCCGTCATCGGACTCACCGCCTATGTCTCCGATCAGCCCTGTAATCAGCGGCGGCGAATCGTTCAGTAGATTAGTCGCATTGATGCACAGTTTTCACCTGGACGAACTGAAAACGAATCCAGCCGTCTCCGGCTTCAGTCCAAGTCTCCGGCGGAACTCCGGCGCATTTGATCTGTGGGACAGAGAAAATGAAGAAGAACCAGCAATGGAGAGAGTAGAATCAGGGAGAAACCTACGAGCCCAAATGTACGCGAAATTAATGAGAGAGAATTCAGTGGACCGAGTCCGGCCACTGATATCGGCCGGATCACGGAACTAA 921 55.92 MITESMLLNPTAHISSWDSLDDPAAAIPSYFTAGPVSPLDSPTAALMDFDSSFWEDPDLPSAVDAFSCDQFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGTECPDLRHGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCRRRVCFFAHSSEQLRIPGKQSLRSPRAREIAVPAVSSPTSILMSPSSDSPPMSPISPVISGGESFSRLVALMHSFHLDELKTNPAVSGFSPSLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLISAGSRN 306
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 26966745 26967665 + CaPI482276_08g021540.1 Cam08g2154 134205
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cam08g2154 306 FunFam Zinc finger CCCH domain-containing protein 66 68 136 - -
Cam08g2154 306 Gene3D - 107 178 - -
Cam08g2154 306 ProSiteProfiles Zinc finger C3H1-type profile. 110 137 IPR000571 GO:0046872(InterPro)
Cam08g2154 306 PANTHER UNKEMPT FAMILY MEMBER 52 237 IPR045234 -
Cam08g2154 306 SMART c3hfinal6 110 136 IPR000571 GO:0046872(InterPro)
Cam08g2154 306 SMART c3hfinal6 145 168 IPR000571 GO:0046872(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g2154 Cam-Chr8:26966745 Cam11g0200 Cam-Chr11:3522594 2.20E-63 dispersed
Cam03g1606 Cam-Chr3:31060957 Cam08g2154 Cam-Chr8:26966745 4.10E-67 wgd
Cam05g1935 Cam-Chr5:28293110 Cam08g2154 Cam-Chr8:26966745 1.80E-77 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g2154 - - - 0.0