Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam08g2214 | ATGTATTATCAGCTAGCGAGGTCTTCTTGCAAGGATTCTCTGAAGGTCCTGGAAGAAGATGTACAGCGCGCCAATGCTTTGGCTGCTGCAATTCCAAGAGCCAAACATGGTTCCTATCTTCAAATGAAGTTGGTTTACAATCAATTGGCTCCTTTCTTTCTGTTTTTGATGCAATGGCTGGATTGTTCATGCACTTGTATACTTCCCAGATACCTAAATTTCTTCCACATACTTGTTTACAAGGTTTACACTGATGGAAGACCTAATATATCAGCACATGGAAGAAAGGCAACTGTCAAGGATTTTTATGCTGTCATATTGCCATCCCTTCAACGGCTCCAAGCGAACGCCGAGGAGTTTGACAATGCTAAAGAGAAGTGTGTCAAGTCCAATAAGTCTAGTGAGAGAAGAGTTCAAGGAGATGGAAAACTCTCCAATGGTGATTTGGAGAGAGAAGATGAGTGTGGGATTTGCTTAGAACCTTCAACAAAAATGGTGTTGCCAAACTGCTGCCATTCAATGTGCATTAAATGTTACCACAATTGGAACACGAGATCGGAATCGTGCCCGTTTTGCCGAGGAAGCTTGAAGAGGATCAAATCAGAGGACTTATGGGTGCTAACTTGCAATGAGGATGTGGTTGATGCTGAAAAGCCCAACTCTGAAAGGCATTTTCACCAGGCTTTAAGCTGCCATGGCTATCCCAATGGAGCTATGGAGGGGCATTTTCCATATATAGTAAAGACTACAAAAGTACAAAAAGTGGCTGGAGCTGGTAGCCTAAGGCTATATATGCCTTTGCCTTTGCCTTTGTCATTGATAGCTGATGATGGGGGAGAAAGCTCCATCCTCATGGAAAATGGCTTCTCTTCTCCCCGAAGTGATGCGTTTCCTATCGGTCTTCGTGTTCTTGTTGTTGATGATGATCCAACATGGCTGAAAATCCTGGAAAAGATGCTCAAGAAGTGCTCTTACGAAGTGACTACATGTTGCTTGGCAAGGGAGGCTCTGAGCCTGCTTAGGGAGAGAAAAGATGGATATGATATCGTAATCAGCGACGTCAACATGCCCGATATGGATGGTTTTAAACTCCTTGAGCATGTGGGATTGGAAATGGACCTGCCAGTTATCATGATGTCAGTCGACGGAGAAACGAGCAGAGTAATGAAAGGGGTTCAACATGGTGCTTGTGATTATCTTCTAAAGCCGATACGAATGAAAGAACTTAGGAATATATGGCAGCATGTATTGCGAAAGAAGATACAAGAGGGAAGAGATATTGAAGGCCATGATGTTATTGAAGGCATCCACATCCTAAGAAATGTGGCAGATAGGTATGATGATAGCCAGTTCCTTAGAGGAGAGGAACTATTTTCAGTGAGGAAACGAAAAGATATTGATAAGCATGAGGACAAAGACTTTTGTGACACTTCTTCAACAAAGAAAGCAAGGGTTGTTTGGTCAGTTGATCTGCACCAGAAATTTGTAAAAGCAGTAAACCAGATAGGTTTTGACAAAGTTGGCCCTAAAAAGATACTTGATCTGATGAATGTCCCATGGCTAACTAGGGAAAATGTAGCAAGCCACTTGCAGAAATATCGCCTCTATTTGAGTCGACTGCAGAAAGAAAATGATCCAAAAGCTTGCTTTGTTGTTGGAATGAAACATACAGATTCGTGTTCGAAGGATGGAGATGGAAACTTTGGCCTTCGTAGCTCATTAGCCGTGCCACAAAATGATGTCACAAATAGCAGCTTCAGTTTTTCAGGTGATAACTTCCTGCTACAGAATGTTGATTCCATAGGCTGTGAAGTTGATAGGAAAAGGGTTGTTCAAGAGCATACATCAGAGCCAAAAAGAGCTGCTGCTAGGAGTGTTCCTGAACCGATAAAGTCCAGGTGTACTCAGATGAAATTCAACAACTCTATTCACTCTGTTGAACCTGAAGGGAAGTTTGCAGCATTTGACCCAAGCAACCGAAGCTGTTATCCTTGGGTTGAAGCTCCAGAAATCAAGTTCAAACAAGAAAGCAAGCCACTTGTGCATTTAGAAGGAGATTTCAATCAGTTCCCTCCAACGGTTCCACCACACCAAGTTCAAATGGACCCACTACAATCAATTTCGTCCATTAGTTCTGGACGGTCAGCAACGGAGAAAGATATAGCAAACTCCATTGAAAGTAAGCCTCCATATTCTGAGGACTGTAGCCAACAAATGGTCCATTTAAATCTACCGAAAACTCCAACTGATTCATTTTCTGGCAAGGCTAAGAGTTTCAATGAGATGAATGACCATTTTGATCCCAATTCAACTACTACTGCTCCAATGGGCAAAAACCAGAATTTCAATCTTAGCTGCATTTCAACTGATTTAGGAAGTGGGTTACCTTTTGCAACCATTGATGAAGATTTGCAGGGCTATTTACTTCAAGATGGCTGCTATCCAAAGGACCTTGAACATCAGATTATAGAGTTTCCAGATTATGGTGATCCAGGCATCTTCACTGAAGTTCCTACTCACCTTTACGATGCAATGAGGTTTGGCTATGATTATTCCTACGACCCAACTGAGTATCCGGTGATAGATGAAGGCCTATTTATTGCATGA | 2607 | 42.19 | MYYQLARSSCKDSLKVLEEDVQRANALAAAIPRAKHGSYLQMKLVYNQLAPFFLFLMQWLDCSCTCILPRYLNFFHILVYKVYTDGRPNISAHGRKATVKDFYAVILPSLQRLQANAEEFDNAKEKCVKSNKSSERRVQGDGKLSNGDLEREDECGICLEPSTKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLKRIKSEDLWVLTCNEDVVDAEKPNSERHFHQALSCHGYPNGAMEGHFPYIVKTTKVQKVAGAGSLRLYMPLPLPLSLIADDGGESSILMENGFSSPRSDAFPIGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEGHDVIEGIHILRNVADRYDDSQFLRGEELFSVRKRKDIDKHEDKDFCDTSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKHTDSCSKDGDGNFGLRSSLAVPQNDVTNSSFSFSGDNFLLQNVDSIGCEVDRKRVVQEHTSEPKRAAARSVPEPIKSRCTQMKFNNSIHSVEPEGKFAAFDPSNRSCYPWVEAPEIKFKQESKPLVHLEGDFNQFPPTVPPHQVQMDPLQSISSISSGRSATEKDIANSIESKPPYSEDCSQQMVHLNLPKTPTDSFSGKAKSFNEMNDHFDPNSTTTAPMGKNQNFNLSCISTDLGSGLPFATIDEDLQGYLLQDGCYPKDLEHQIIEFPDYGDPGIFTEVPTHLYDAMRFGYDYSYDPTEYPVIDEGLFIA | 868 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 27426644 | 27438483 | - | CaPI482276_08g022140.1 | Cam08g2214 | 134265 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam08g2214 | 868 | Gene3D | - | 301 | 453 | - | - | |
Cam08g2214 | 868 | Coils | Coil | 110 | 130 | - | - | |
Cam08g2214 | 868 | ProSiteProfiles | Response regulatory domain profile. | 302 | 417 | IPR001789 | GO:0000160(InterPro) | |
Cam08g2214 | 868 | SMART | ring_2 | 155 | 192 | IPR001841 | - | |
Cam08g2214 | 868 | SUPERFAMILY | CheY-like | 300 | 425 | IPR011006 | - | |
Cam08g2214 | 868 | FunFam | Two-component response regulator | 478 | 541 | - | - | |
Cam08g2214 | 868 | SMART | REC_2 | 301 | 413 | IPR001789 | GO:0000160(InterPro) | |
Cam08g2214 | 868 | Gene3D | - | 478 | 541 | - | - | |
Cam08g2214 | 868 | CDD | REC_typeB_ARR-like | 303 | 417 | - | - | |
Cam08g2214 | 868 | FunFam | RING/U-box superfamily protein | 136 | 202 | - | - | |
Cam08g2214 | 868 | FunFam | Two-component response regulator | 301 | 456 | - | - | |
Cam08g2214 | 868 | SUPERFAMILY | RING/U-box | 148 | 199 | - | - | |
Cam08g2214 | 868 | ProSiteProfiles | Zinc finger RING-type profile. | 155 | 193 | IPR001841 | - | |
Cam08g2214 | 868 | Pfam | Response regulator receiver domain | 303 | 411 | IPR001789 | GO:0000160(InterPro) | |
Cam08g2214 | 868 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 295 | 616 | IPR045279 | GO:0009736(InterPro) | |
Cam08g2214 | 868 | Pfam | Zinc finger, C3HC4 type (RING finger) | 152 | 198 | - | - | |
Cam08g2214 | 868 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 128 | 203 | IPR013083 | - | |
Cam08g2214 | 868 | Pfam | Myb-like DNA-binding domain | 484 | 534 | IPR001005 | - | |
Cam08g2214 | 868 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 482 | 535 | IPR006447 | GO:0003677(InterPro) | |
Cam08g2214 | 868 | ProSitePatterns | Zinc finger RING-type signature. | 170 | 179 | IPR017907 | - | |
Cam08g2214 | 868 | SUPERFAMILY | Homeodomain-like | 480 | 539 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam03g0342 | Cam-Chr3:4598492 | Cam08g2214 | Cam-Chr8:27426644 | 3.90E-66 | dispersed | |
Cam05g2819 | Cam-Chr5:35278706 | Cam08g2214 | Cam-Chr8:27426644 | 5.40E-56 | dispersed | |
Cam06g1357 | Cam-Chr6:24953391 | Cam08g2214 | Cam-Chr8:27426644 | 4.10E-71 | dispersed | |
Cam08g2214 | Cam-Chr8:27426644 | Cam11g0360 | Cam-Chr11:5114880 | 1.90E-64 | dispersed | |
Cam01g0009 | Cam-Chr1:551651 | Cam08g2214 | Cam-Chr8:27426644 | 3.40E-19 | transposed | |
Cam05g2817 | Cam-Chr5:35255424 | Cam08g2214 | Cam-Chr8:27426644 | 5.10E-90 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52502 | PF00072 | Response_reg | 2.20E-24 | CL0304 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam08g2214 | K14491 | - | csv:101204370 | 1119.38 |