Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g2221 ATGTGGTCTGTTTCATCTTCTCCAGTAGCCGATCCTGAAGTAGTTGTCCAAGAAGTTCTAACGAGCATCAACAATGCAACAACAAGAAGGAATTTGGGGTTCCTGTCCTGCGGAACCGGGAACCCAATAGACGACTGTTGGCGGTGTGATCCCAATTGGGAGAAGAACCGAAAGCGGCTAGCCGACTGCGCCATTGGGTTCGGGAAGAGAGCCATCGGTGGCAAAAACGGTAAATTCTACATTGTCACTGACCCCTCCGATAAGGACGTGGTGAACCCAAAACCAGGCACTCTCCGCCACGCCGTAATCCAAAAGGAACCCTTATGGATCATCTTCAAACGCGACATGGTCATCAAATTAAAAGCAGAGCTTCTGATGAACTCTTTCAAAACCATCGACGGTCGCGGCGCGTCCGTCCACATTGCCGGTGGGCCTTGCATTACCATTCAATTTGTGACCAACATTATAATCCACGGCATCAACATTCACGATTGCAAGCAAGGTGGGAACACGTACGTCAGAGACTCGCCGGAGCATTACGGTTGGAGGACTTTGTCGGACGGCGACGGGGTTTCCATATTTGGGGGCAGCCATATTTGGGTGGACCATTGCTCTTTGTCCAATTGTCGAGATGGGCTAATTGATGCGATTCATGGGTCGACGGCTATCACTCTTTCCAACAATTACATGACCCACCATAACAAAGTTATGCTTTTAGGACATAGTGATTCCTATACTCAAGACAAGAACATGCAAGTCACCATTGCTTTTAACCATTTTGGTGAGGGTCTTGTGCAAAGAATGCCACGATGCCGTCATGGATATTTCCATGTGGTGAATAATGACTATACTCATTGGATAATGTACGCCATTGGTGGAAGTGCATCTCCTACTATCAATAGTCAAGGGAATAGATACCTTGCTCCCGATAACCGAGATAGAAAAGAGGTGACAAAACGAGAGGATGCACCGCAAAGCAAATGGAAGAATTGGAATTGGAGATCCGATGGAGATTTAATGTTGAATGGAGCATTCTTCACAAGGTCCGGTGCTGGAGCATCGTCTAGCTATGCGAGAGCATCGAGTTTGAGTGCGAAATCGTCGTCTCTAGTTAGTTCGATGACGGCAAAAGCGGGGGTGCTTTCCTGCCGAAAAGGCTCCCGGTGTTAG 1170 47.95 MWSVSSSPVADPEVVVQEVLTSINNATTRRNLGFLSCGTGNPIDDCWRCDPNWEKNRKRLADCAIGFGKRAIGGKNGKFYIVTDPSDKDVVNPKPGTLRHAVIQKEPLWIIFKRDMVIKLKAELLMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNTYVRDSPEHYGWRTLSDGDGVSIFGGSHIWVDHCSLSNCRDGLIDAIHGSTAITLSNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPDNRDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSLVSSMTAKAGVLSCRKGSRC 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27475673 27477792 + CaPI482276_08g022210.1 Cam08g2221 134272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g2221 389 PRINTS Pollen allergen Amb family signature 87 112 IPR018082 -
Cam08g2221 389 PRINTS Pollen allergen Amb family signature 123 139 IPR018082 -
Cam08g2221 389 PRINTS Pollen allergen Amb family signature 360 383 IPR018082 -
Cam08g2221 389 PRINTS Pollen allergen Amb family signature 267 286 IPR018082 -
Cam08g2221 389 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Cam08g2221 389 PRINTS Pollen allergen Amb family signature 63 80 IPR018082 -
Cam08g2221 389 PRINTS Pollen allergen Amb family signature 187 208 IPR018082 -
Cam08g2221 389 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Cam08g2221 389 PANTHER PECTATE LYASE 18-RELATED 26 386 IPR045032 GO:0030570(InterPro)
Cam08g2221 389 Pfam Pectate lyase 127 304 IPR002022 -
Cam08g2221 389 SUPERFAMILY Pectin lyase-like 21 383 IPR011050 -
Cam08g2221 389 FunFam Pectate lyase 40 382 - -
Cam08g2221 389 Gene3D - 40 382 IPR012334 -
Cam08g2221 389 SMART amb_all 115 312 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0333 Cam-Chr3:4514431 Cam08g2221 Cam-Chr8:27475673 7.70E-189 dispersed
Cam05g2653 Cam-Chr5:34010859 Cam08g2221 Cam-Chr8:27475673 7.00E-132 dispersed
Cam08g1230 Cam-Chr8:18675532 Cam08g2221 Cam-Chr8:27475673 2.50E-141 dispersed
Cam08g2221 Cam-Chr8:27475673 Cam09g1998 Cam-Chr9:34622976 2.20E-185 dispersed
Cam08g2221 Cam-Chr8:27475673 Cam05g0405 Cam-Chr5:3733631 5.60E-173 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g2221 K01728 - csv:101208076 724.161