Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g2251 ATGGACTCCCGTGGTTTGCGCTGGGAAGCAGCTTTAGGGGCTCTCCCTCTCTCTCACCCACGCACTGTCTCTTCAGTCTTCCTGTTGGTTAGTGCTTGCCACTTTCTGTTGACAAATAGTCTGTTGTGGGTCTTTCAGCTTCATAATGTGTCTTACACGTGTGACCTGCCTGCTTCATACCTGTATCCTCCGATTCGGCGTTTGGGTGTCCCAGATTCCCACTCGATCGTGGCCCGTTGGTTGTGCTCCCGAGCCCGTAGTTTAGTTCTCGCCTCCGTACTTGAACTTTTAATCTGGTGTATTGTAGATGAGGATGCTATGTCATCAGATGATGAGCTTAACTGGGGAGAGAGGGAATTACAAGATGCTCAAATGAGGTTGGAAGACAAAGGTCTTAAAGATATGCTCTTAAGTAGATTTGGCAGCCACATTGGTACCTTGAAGCTGGAATTTTCGAAGAAGAAGAAGAAAGGAAAACTACCTAAAGAAGGAAGGAAAGTACTGTTCGAGTGGTGGAATGTTCACTATAAATGGCCATATCCTACGGAAGCTGATAAGGTTGCGCTGGCAGAGACAACAGGACTAGATCCCAAGCAAATTAACAATTGGTTTATTAATCAACGAAAGCGGCACTGGAAACCTTCTGAAAGTATGCAATATGCAAATATGGATAATGTGGCCGATCAATTTTACGCTAGGCTCGACTCTTGTGAATGA 717 45.47 MDSRGLRWEAALGALPLSHPRTVSSVFLLVSACHFLLTNSLLWVFQLHNVSYTCDLPASYLYPPIRRLGVPDSHSIVARWLCSRARSLVLASVLELLIWCIVDEDAMSSDDELNWGERELQDAQMRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLFEWWNVHYKWPYPTEADKVALAETTGLDPKQINNWFINQRKRHWKPSESMQYANMDNVADQFYARLDSCE 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27644182 27649771 - CaPI482276_08g022510.1 Cam08g2251 134302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g2251 238 SUPERFAMILY Homeodomain-like 152 224 IPR009057 -
Cam08g2251 238 SMART ELK_2 131 152 IPR005539 GO:0003677(InterPro)
Cam08g2251 238 ProSitePatterns 'Homeobox' domain signature. 189 212 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cam08g2251 238 Gene3D - 150 227 - -
Cam08g2251 238 ProSiteProfiles 'Homeobox' domain profile. 151 214 IPR001356 GO:0003677(InterPro)
Cam08g2251 238 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Cam08g2251 238 SMART HOX_1 153 218 IPR001356 GO:0003677(InterPro)
Cam08g2251 238 Pfam ELK domain 132 152 IPR005539 GO:0003677(InterPro)
Cam08g2251 238 CDD homeodomain 165 215 IPR001356 GO:0003677(InterPro)
Cam08g2251 238 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 120 223 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam08g2251 238 Pfam Homeobox KN domain 171 210 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g2153 Cam-Chr8:26942975 Cam08g2251 Cam-Chr8:27644182 1.90E-33 dispersed
Cam05g2746 Cam-Chr5:34728066 Cam08g2251 Cam-Chr8:27644182 1.50E-49 wgd
Cam06g1857 Cam-Chr6:29621606 Cam08g2251 Cam-Chr8:27644182 6.40E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52504 PF05920 Homeobox_KN 2.90E-17 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g2251 - - - 0.0