Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0023 ATGGGGAAAGCTACCAGATGGTTGAAGGGTTTATTGGGGATCAAGAAAGAAAAAGACCCATCTGGGAATTCAAATTCAAATTCAAATTCAACCACCCTCGCCGCCGACAGAAAGGACAAGAAACGCTGGAGTTTTGCAAAGTCCGCTAGAGATTCCGGCCAAACGCCGCCTCCACCGCCGGACACTACTTGGTTCAGATCCTCCTACATTTCTGATTCAGAGAAAGAGCAGAACAAACACGCAATTGCTGTAGCTGCAGCCACCGCCGCCGCCGCAGACGCCGCCGTCGCTGCCGCGCAAGCGGCGGTGGCCGTCGTCCGCCTGACTAGCCAAGGAAGAGGGTCTCTTTATATCACTGGAAGAGATAGATGGGCTGCTGTGAAGATTCAAACAGTTTTTAGGGGCTATTTGGCAAGAAAGGCCCTGCGAGCTCTCAAAGGGCTTGTTAAATTGCAGGCTGTGGTTAGAGGATTTCTTGTGAGGAAAAGAGCTGCTGCTACTCTTCACAGTATGCAAGCTCTTTTTCGAGCTCAAACTGCAGTTAGAACTCAGAGAGCTCGTCGATCTTTCAACAAAGAGAACAGGTTTATCCCCGAGATTCGTCCCCGAAAATCTTCGGAACGCTTTGATGAAACAAGAAGTGAATTATTCCATAGTAAGAGGTTGTCTGTAGCATCATCTTATGACACAACCTGTATGAATTCATTGGATGAGAGTCCCAAAATTGTGGAAATCGACACCTACCGAACTCGATCGAGGTCTCGTAGGTACATTTCGACATTGTCTGAATGCGGAGGAGATGATGTAGCTTTCCAAGCAATCTCTTCATCGCCATTACCTTGTCCGAATCGACCTCGCGTCGTTGTGGATTGCCACAACAATGTGCTTCAAGACTTTGAATGGTGCTTGATGGGTGAGGACTGCAAGTTCCCTACAGCTCACAGCACGCCCCGGCTATCGAATAACTCGTTCGTCTCTGCCAACGTGCCAGTCACCCCATCCAAGAGCGTGTGCGGGGACAGCTTCTTTAGGCCATACATGAACTACTGCCCCAATTATATGGCGAACACACAATCTTTCAAGGCAAAACTGAGGTCTCAAAGTGCCCCAAAGCAAAGGCCAGAGCCAGGGTCCAAGAAGAAGCTATCATTGAATGAAATAATGGCAGCAAGAAACAGCTTGAGCAGTGTAAGAATGCGAAGACCAAATAACCAAATGCTGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATGATGAAGAAGAAGAAGAAACATCATATGGTTTTTGA 1311 47.44 MGKATRWLKGLLGIKKEKDPSGNSNSNSNSTTLAADRKDKKRWSFAKSARDSGQTPPPPPDTTWFRSSYISDSEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGSLYITGRDRWAAVKIQTVFRGYLARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQALFRAQTAVRTQRARRSFNKENRFIPEIRPRKSSERFDETRSELFHSKRLSVASSYDTTCMNSLDESPKIVEIDTYRTRSRSRRYISTLSECGGDDVAFQAISSSPLPCPNRPRVVVDCHNNVLQDFEWCLMGEDCKFPTAHSTPRLSNNSFVSANVPVTPSKSVCGDSFFRPYMNYCPNYMANTQSFKAKLRSQSAPKQRPEPGSKKKLSLNEIMAARNSLSSVRMRRPNNQMLQEEEEEEEEEEEDDDDDDDEEEEETSYGF 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1193365 1195155 + CaPI482276_09g000230.1 Cam09g0023 134352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0023 436 MobiDBLite consensus disorder prediction 1 63 - -
Cam09g0023 436 Gene3D - 75 148 - -
Cam09g0023 436 MobiDBLite consensus disorder prediction 19 33 - -
Cam09g0023 436 ProSiteProfiles IQ motif profile. 122 150 - -
Cam09g0023 436 MobiDBLite consensus disorder prediction 408 436 - -
Cam09g0023 436 Pfam IQ calmodulin-binding motif 123 143 IPR000048 GO:0005515(InterPro)
Cam09g0023 436 Pfam IQ calmodulin-binding motif 149 163 IPR000048 GO:0005515(InterPro)
Cam09g0023 436 MobiDBLite consensus disorder prediction 362 436 - -
Cam09g0023 436 PANTHER IQ-DOMAIN 5-RELATED 6 385 - -
Cam09g0023 436 ProSiteProfiles IQ motif profile. 146 173 - -
Cam09g0023 436 MobiDBLite consensus disorder prediction 388 403 - -
Cam09g0023 436 SMART iq_5 144 165 IPR000048 GO:0005515(InterPro)
Cam09g0023 436 SMART iq_5 121 143 IPR000048 GO:0005515(InterPro)
Cam09g0023 436 Coils Coil 404 427 - -
Cam09g0023 436 Pfam Protein of unknown function (DUF4005) 314 399 IPR025064 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0023 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1624 Cam-Chr3:31233212 Cam09g0023 Cam-Chr9:1193365 1.80E-56 dispersed
Cam09g0023 Cam-Chr9:1193365 Cam09g2081 Cam-Chr9:35375784 6.80E-10 dispersed
Cam07g1230 Cam-Chr7:26639794 Cam09g0023 Cam-Chr9:1193365 4.90E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g268 Blo05g00074 Blo06g00714 . . Bpe06g00755 Bpe10g00674 . Bma13g01244 Cmo08g00706 Cmo17g00728 Cma01g00093 Cma14g01288 Car01g00077 Car14g01140 . Cpe12g00644 Cpe17g00525 . . . . . . . Cla07g01269 Cam07g1230 Cec07g1451 Cco07g1412 Clacu07g1334 Cmu07g1313 Cre07g1696 Cone20ag1278 Cone17ag0129 Cone16ag0724 Cone2ag0310 Lsi02g02822 Csa07g02270 Chy04g00953 Cme01g02724 . Blo10g00997 . . . Bpe09g00007 . Bma15g00349 . Cmo01g00094 Cmo14g01322 Cma08g00741 Cma17g00759 Car08g00629 Car17g00704 Cpe02g01697 Cpe03g01092 Bhi09g00470 . . . . . . Cla09g00021 Cam09g0023 Cec09g0022 Cco09g0024 Clacu09g0028 . Cre09g0022 Lsi07g00528 Csa03g02352 Chy01g02095 Cme04g01144
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam09g2081 . 1 479 IQD Protein Family AT3G52290 54.2 2.3e-103 372.9
Cam03g1240 . 50 457 IQD Protein Family AT3G22190 57.8 3.2e-97 352.4
Cam05g1966 . 1 438 IQD Protein Family AT2G26180 61.8 9.1e-121 430.6
Cam01g2409 . 50 323 IQD Protein Family AT2G33990 52.5 2.5e-63 239.2
Cam07g1020 . 109 292 IQD Protein Family AT2G33990 54.0 1.7e-48 189.9
Cam01g2409 . 50 271 IQD Protein Family AT3G15050 50.9 1.9e-55 213.0
Cam07g1020 . 112 285 IQD Protein Family AT3G15050 62.1 3.5e-54 208.8
Cam01g0768 . 111 463 IQD Protein Family AT5G13460 50.4 8.1e-75 278.1
Cam06g0278 . 1 509 IQD Protein Family AT4G00820 50.9 2.4e-113 406.4
Cam09g0023 . 1 402 IQD Protein Family AT3G16490 50.1 2.7e-66 249.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004070 3 1 3 2 3 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 2 1 1 1 1 1 2 1 0 44