Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0024 ATGTCGTGGCAAACGTACGTGGACGATCACCTGATGTGTGAGATTGAAGGAAACCATCTGACCTCCGCCGCAATCATCGGACACGACGGCAGTGTTTGGGCGCAGAGCTCCTCATTCCCTCAGTTTAAGGCGGAGGAGATATCGGCGATTATGAAGGATTTGGATGAGCCAGGTTCTCTTGCACCAACTGGATTACACCTGGGAGGCACTAAATACATGGTCATCCAAGGAGAGCCTGGATCCGTTGTTCGTGGCAAAAAGGGTGCTGGGGGAATCACTGTGAAGAAAACTGAGAAGGCTGTCATAATTGGGATTTATGATGAACCTTTGACTCCTGGACAATGCAATATGGTGGTTGAAAGGTTGGGAGATTACCTCATCGAACAGGCTTTGTAG 396 49.24 MSWQTYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSSSFPQFKAEEISAIMKDLDEPGSLAPTGLHLGGTKYMVIQGEPGSVVRGKKGAGGITVKKTEKAVIIGIYDEPLTPGQCNMVVERLGDYLIEQAL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1200515 1201976 - CaPI482276_09g000240.1 Cam09g0024 134353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0024 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Cam09g0024 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Cam09g0024 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Cam09g0024 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Cam09g0024 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Cam09g0024 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Cam09g0024 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779(InterPro)
Cam09g0024 131 FunFam Profilin 1 131 - -
Cam09g0024 131 Pfam Profilin 1 129 IPR048278 GO:0003779(InterPro)
Cam09g0024 131 SMART prof_2 1 131 IPR005455 GO:0003779(InterPro)
Cam09g0024 131 SUPERFAMILY Profilin (actin-binding protein) 2 129 IPR036140 -
Cam09g0024 131 CDD PROF 2 129 IPR005455 GO:0003779(InterPro)
Cam09g0024 131 Gene3D Dynein light chain 2a, cytoplasmic 1 130 - -
Cam09g0024 131 PANTHER PROFILIN 1 129 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Cam09g0024 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Cam09g0024 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Cam09g0024 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Cam09g0024 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Cam09g0024 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Cam09g0024 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779(InterPro)
Cam09g0024 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g0024 Cam-Chr9:1200515 Cam11g0212 Cam-Chr11:3658864 8.80E-62 dispersed
Cam11g1523 Cam-Chr11:28062703 Cam09g0024 Cam-Chr9:1200515 3.80E-38 wgd
Cam07g1227 Cam-Chr7:26611933 Cam09g0024 Cam-Chr9:1200515 1.50E-56 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0024 K05759 - cit:102614190 243.817