Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0035 ATGGATCATTTGAATTGGAATGGTTATGGATCAAGAGTTGCGACGAAAACGACGACGTCGGCATCGTTTTGGAGCAATTACCAACAAGGAGTTGAAGAAAGGTTCATGATATCCAACTCAAATAATTCCAACTTCTTCAACTCACTTCAAGACTTCCCAATTAAAGAAGCTGCAACTTCTTCAGCTCTGGTTTCAAAAACAGGGGAAGCTTTGGTTATCAGTCCTCCATTGACCAGCTTTACAACATCTAGCAACATGGATGTTGTTGGCCTTGAATCACAGCTCCTCACCGGCTTCAACGGCGACAAATCGGCGACGGTAACGACGTGCTCTCTCGAGTCGTTGGACTGTTTGCTTTCAGCTACAAACAGCAACACAGACACATCAGTTGAAGATGATGGATCAGTTTCAATGATGTTAACAGATTACAACAATTTATGGAACTTCGGAGGAAATGCAGCAGCATCTTCAAGAGAATCTGAAAAGAATGGTTCAAATTCTACAAAGAGAAGCCACGACCAAACTCATTTCAAAGCTGCAGATTACTCTATTTTCTCAAATAACATCATAAATCTATCTGATTCCACTTCAGACAGTGGAGGATTTAGGATCATAACAGATCAGAATCCGCCAAAACAGAAGAAACCCAGATCAGAAAAGCCACCAAGTTCATCAAACATCAATTTTCAACAATCATGTTCATCAGGATCTTCTTGTATTGATCAAGAGCCTGATCCAGAGGCCATTGCACAAATGAAGGAGATGATCTACAGAGCAGCAGCTTTCAGGCCAGTGAATTTGGGGTTGGAAATGATAGAAAAGCCCAAAAGGAAGAATGTGAGAATTTCAACAGACCCACAAACTGTAGCAGCAAGGCAAAGGAGAGAGAGAATCAGTGAGAGAATTAGGGTTTTGCAAAGGCTTGTTCCTGGTGGAAGCAAAATGGATACAGCATCAATGCTTGATGAAGCTGCAAATTATCTCAAGTTCTTGAAGTCTCAGATCAAAGCTTTAGAGAATCTTGGGCAAAAGCTTGAGTCTTTGAATTGCCCTCCAACTAGCATAGCTTTCTCTTTCAACCCATCTTTTCCCATACAAACATCATCATCATCCTCCCATAATAATTTCACGCTCCAAAATCCCAACCACCTTATTAGCCAATATCCCCAAAACTAA 1176 41.07 MDHLNWNGYGSRVATKTTTSASFWSNYQQGVEERFMISNSNNSNFFNSLQDFPIKEAATSSALVSKTGEALVISPPLTSFTTSSNMDVVGLESQLLTGFNGDKSATVTTCSLESLDCLLSATNSNTDTSVEDDGSVSMMLTDYNNLWNFGGNAAASSRESEKNGSNSTKRSHDQTHFKAADYSIFSNNIINLSDSTSDSGGFRIITDQNPPKQKKPRSEKPPSSSNINFQQSCSSGSSCIDQEPDPEAIAQMKEMIYRAAAFRPVNLGLEMIEKPKRKNVRISTDPQTVAARQRRERISERIRVLQRLVPGGSKMDTASMLDEAANYLKFLKSQIKALENLGQKLESLNCPPTSIAFSFNPSFPIQTSSSSSHNNFTLQNPNHLISQYPQN 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1317160 1318335 - CaPI482276_09g000350.1 Cam09g0035 134364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0035 391 Coils Coil 321 348 - -
Cam09g0035 391 MobiDBLite consensus disorder prediction 154 173 - -
Cam09g0035 391 Gene3D - 287 350 IPR036638 GO:0046983(InterPro)
Cam09g0035 391 SMART finulus 288 337 IPR011598 GO:0046983(InterPro)
Cam09g0035 391 MobiDBLite consensus disorder prediction 220 241 - -
Cam09g0035 391 FunFam BHLH transcription factor 285 349 - -
Cam09g0035 391 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 115 377 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0035 391 Pfam Helix-loop-helix DNA-binding domain 291 332 IPR011598 GO:0046983(InterPro)
Cam09g0035 391 MobiDBLite consensus disorder prediction 199 243 - -
Cam09g0035 391 MobiDBLite consensus disorder prediction 368 391 - -
Cam09g0035 391 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 287 347 IPR036638 GO:0046983(InterPro)
Cam09g0035 391 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 282 331 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0868 Cam-Chr3:10630554 Cam09g0035 Cam-Chr9:1317160 5.30E-09 dispersed
Cam04g0695 Cam-Chr4:21264605 Cam09g0035 Cam-Chr9:1317160 9.20E-20 dispersed
Cam05g2201 Cam-Chr5:30350332 Cam09g0035 Cam-Chr9:1317160 2.30E-30 dispersed
Cam08g2075 Cam-Chr8:26298396 Cam09g0035 Cam-Chr9:1317160 4.80E-29 dispersed
Cam09g0035 Cam-Chr9:1317160 Cam10g1021 Cam-Chr10:22591753 1.00E-12 dispersed
Cam07g1215 Cam-Chr7:26524989 Cam09g0035 Cam-Chr9:1317160 1.40E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52509 PF00010 HLH 7.20E-06 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0035 - - - 0.0